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TranScout Classification

About this site

Help on TrSDB

TrSDB is a BioDB (Biological Relational DataBase) that through the same web interface joins several predictive analyses of protein motifs, domains, cellular localization and functional annotation around different compiled sequences, now IPI and SPTR Non-Redundant proteomes.
TranScout, TransMem and ProtLoc predictions with crosslinks to InterPro, Gene Ontology Annotation, ENSEMBL, SWISS-PROT/TREMBL, REFSEQ and inter and intraspecies precomputed BLAST Analyses are provided when suitable for each proteome entry.

By now, nine eukaryotic organisms proteomes (human, mouse, rat fruit fly, worm, Arabidopis, an alga and two yeasts) may be queried. Periodically compiled proteomes will be updated all at the same time to mantain temporal coherency and new analyses will be provided as well.
When one organism has been selected, a funny icon in the upper-right part of the web screen may help you to remind your organism selection.
Homo sapiens
Mus musculus
Rattus norvegicus
Arabidopsis thaliana
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Guillardia theta

TrSDB for Web Interface and Analysis
Relations in TrSDB for analysis and/or web interface.

Emphasis is placed upon Transcription Factor prediction supported by TranScout. Complex analyses are performed searching for Transcription Factor evidence from TranScout and InterPro matches as well as existing GO annotation. Mutual transcription factor evidence among homologues is also considered and compiled analyses files are available.

In this latter sense, interested users may download Database dumps for making their own analyses locally.

Finally, if you had any problem with TrSDB or any comment about information you retrieved from this site, you may want to write us.

Centre Prote˛mica i BioinformÓtica Aplicada