ACCESSION ANNOTATION INTERPRO GOA TRS Organism: H.sapiens M.musculus R.norvegicus D.melanogaster A.thaliana C.elegans G.theta S.cerevisiae S.pombe Restrict to TranScout Annotated Entries Restrict to InterPro Annotated Entries   Need Help? TranScout Classification Home Analyses Download References Contact About this site TrSDB-current

TrSDB Analyses

Saccharomyces cerevisiae Proteome statistics

Proteins predicted with TranScout with their associated probability (at least one domain detected as a given probability). Priority to probabilities is the following one: VERY PROBABLE > PROBABLE > POSSIBLE.

	POSSIBLE	PROBABLE	VERY PROBABLE
TranScout detected	966	633	31

Proteins with at least one TRS motif detected by TranScout : 1630
Protein entries in current proteome : 6164


Predicted TranScout motifs by type and probability :

TRS	Signature	Function	Possible	Probable	Very Probable	Total
TRS0001	Cys2His2 zinc finger transcription factors	DNA-binding	554	381	5	940
TRS0024	IclR family of transcription factors	DNA-binding	4	1	0	5
TRS0025	Homeotic transcription factors	DNA-binding	2	3	0	5
TRS0026	bZIP transcription factors	DNA-binding	16	2	0	18
TRS0029	Heat shock transcription factors	DNA-binding	2	1	3	6
TRS0030	Fork head / winged helix transcription factors	DNA-binding	95	192	1	288
TRS0031	MADS transcription factors	DNA-binding	2	0	0	2
TRS0032	TATA-binding proteins	DNA-binding	0	1	1	2
TRS0033	Copper fist transcription factors	DNA-binding	0	2	1	3
TRS0035	Cys4 GATA-type zinc finger transcription factors	DNA-binding	4	15	6	25
TRS0036	Cys6 zinc finger transcription factors	DNA-binding	4	37	9	50
TRS0037	C3HC4 (RING) zinc finger transcription factors	DNA-binding	1	0	0	1
TRS0039	CCHC zinc finger transcription factors	DNA-binding	7	0	0	7
TRS0040	LysR family of transcription factors	DNA-binding	1	1	0	2
TRS0041	LacI family of transcription factors	DNA-binding	336	33	2	371
TRS0042	GntR family of transcription factors	DNA-binding	2	0	0	2
TRS0043	ArsR family of transcription factors	DNA-binding	6	3	0	9
TRS0044	MerR family of transcription factors	DNA-binding	2	1	0	3
TRS0045	AraC family of transcription factors	DNA-binding	8	5	0	13
TRS0046	MAR family of transcription factors	DNA-binding	1	0	0	1
TRS0047	TetR family of transcription factors	DNA-binding	87	29	0	116
TRS0048	LuxR family of transcriptional activator	DNA-binding	40	3	0	43
TRS0049	AsnC-like transcription activators	DNA-binding	0	2	0	2
TRS0051	Some homeotic transcription factors	Zinc binding	6	12	1	19
TRS0052	Variety of transcription factors	Assembly/activation	4	8	2	14
TRS0066	Zinc Ribbon (TFIIS) transcription factors	DNA-binding	9	2	0	11
TRS0067	Poly(ADP-ribose) polymerase zinc finger transcription factors	DNA-binding	4	2	0	6
TRS0068	Some RING-type zinc fingers	Prot-prot interaction	261	42	0	303

TRS motifs numbers in different Eukaryote Proteomes


Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro.

	All Probs InterPro	All Probs/ProtLoc InterPro	Very Probable InterPro	Very Probable/ProtLoc InterPro
	309 Incognito 65	118 Incognito 27	0 Incognito 0	0 Incognito 0
	984 Incognito 97	320 Incognito 31	7 Incognito 2	6 Incognito 2
	124 Incognito 21	80 Incognito 14	22 Incognito 5	15 Incognito 1
Total	1417	518	29	21

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against GOA.

	All Probs GOA	All Probs/ProtLoc GOA	Very Probable GOA	Very Probable/ProtLoc GOA
	241 Incognito 51	95 Incognito 23	2 Incognito 1	2 Incognito 1
	986 Incognito 106	302 Incognito 32	2 Incognito 0	1 Incognito 0
	190 Incognito 26	121 Incognito 17	25 Incognito 6	18 Incognito 2
Total	1417	518	29	21

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro & GOA.

	All Probs InterPro & GOA	All Probs/ProtLoc InterPro & GOA	Very Probable InterPro & GOA	Very Probable/ProtLoc InterPro & GOA
	143 Incognito 31	55 Incognito 14	0 Incognito 0	0 Incognito 0
	1084 Incognito 126	342 Incognito 41	4 Incognito 1	3 Incognito 1
	190 Incognito 26	121 Incognito 17	25 Incognito 6	18 Incognito 2
Total	1417	518	29	21

Symbol Codes

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	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
	191	75	7	3

Symbol Codes

	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
Entries with predicted Transcription Factor associated motifs but not common Transcription Factor motifs (DNA-binding ones)	213	51	2	0