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TrSDB Analyses

Mus musculus Proteome statistics

Proteins predicted with TranScout with their associated probability (at least one domain detected as a given probability). Priority to probabilities is the following one: VERY PROBABLE > PROBABLE > POSSIBLE.

POSSIBLE PROBABLE VERY PROBABLE

TranScout detected 5410 4236 1303

Proteins with at least one TRS motif detected by TranScout : 10949
Protein entries in current proteome : 35874

Predicted TranScout motifs by type and probability :

TRS Signature Function Possible Probable Very Probable Total

TRS0001 Cys2His2 zinc finger transcription factors DNA-binding 6603 13086 3637 23326

TRS0002 Progesterone-type Cys4 zinc finger transcription factors DNA-binding 0 1 0 1

TRS0005 Retinoic acid-type Cys4 zinc finger transcription factors DNA-binding 0 6 0 6

TRS0006 Thyroid receptor-type Cys4 zinc finger transcription factors DNA-binding 5 0 0 5

TRS0007 Vitamin D-type Cys4 zinc finger transcription factors DNA-binding 0 0 2 2

TRS0009 PPAR-type Cys4 zinc finger transcription factors DNA-binding 0 3 0 3

TRS0012 HNF-type Cys4 zinc finger transcription factors DNA-binding 3 0 0 3

TRS0014 Abd_b type of homeotic transcription factors DNA-binding 23 3 12 38

TRS0015 Antennapedia type of homeotic transcription factors DNA-binding 96 18 27 141

TRS0017 Engrailed type of homeotic transcription factors DNA-binding 0 0 2 2

TRS0018 LIM type of homeotic transcription factors DNA-binding 8 5 11 24

TRS0019 NK1 type of homeotic transcription factors DNA-binding 0 3 0 3

TRS0020 NK2 type of homeotic transcription factors DNA-binding 3 4 3 10

TRS0021 NK3 type of homeotic transcription factors DNA-binding 0 0 2 2

TRS0022 Paired type of homeotic transcription factors DNA-binding 8 17 30 55

TRS0023 POU type of homeotic transcription factors DNA-binding 3 7 15 25

TRS0024 IclR family of transcription factors DNA-binding 18 18 2 38

TRS0025 Homeotic transcription factors DNA-binding 28 131 96 255

TRS0026 bZIP transcription factors DNA-binding 72 39 0 111

TRS0028 RF-X transcription factors DNA-binding 0 0 6 6

TRS0029 Heat shock transcription factors DNA-binding 7 0 6 13

TRS0030 Fork head / winged helix transcription factors DNA-binding 422 671 34 1127

TRS0031 MADS transcription factors DNA-binding 4 8 0 12

TRS0032 TATA-binding proteins DNA-binding 0 1 1 2

TRS0034 Cys4 zinc finger transcription factors DNA-binding 12 47 4 63

TRS0035 Cys4 GATA-type zinc finger transcription factors DNA-binding 9 167 20 196

TRS0036 Cys6 zinc finger transcription factors DNA-binding 1 8 0 9

TRS0037 C3HC4 (RING) zinc finger transcription factors DNA-binding 11 8 0 19

TRS0039 CCHC zinc finger transcription factors DNA-binding 36 12 0 48

TRS0040 LysR family of transcription factors DNA-binding 10 6 0 16

TRS0041 LacI family of transcription factors DNA-binding 1707 246 5 1958

TRS0042 GntR family of transcription factors DNA-binding 8 2 0 10

TRS0043 ArsR family of transcription factors DNA-binding 50 24 2 76

TRS0044 MerR family of transcription factors DNA-binding 20 2 0 22

TRS0045 AraC family of transcription factors DNA-binding 33 20 0 53

TRS0046 MAR family of transcription factors DNA-binding 26 1 0 27

TRS0047 TetR family of transcription factors DNA-binding 274 117 7 398

TRS0048 LuxR family of transcriptional activator DNA-binding 107 10 0 117

TRS0049 AsnC-like transcription activators DNA-binding 0 3 2 5

TRS0050 bZIP basic domain of Jun type DNA-binding 0 2 0 2

TRS0051 Some homeotic transcription factors Zinc binding 148 428 126 702

TRS0052 Variety of transcription factors Assembly/activation 7 39 15 61

TRS0053 CCAAT-binding factors (CBF-A) DNA-binding 0 1 1 2

TRS0054 Corticoid-type Cys4 zinc finger transcription factors DNA-binding 2 2 0 4

TRS0055 Estrogen-type Cys4 zinc finger transcription factors DNA-binding 0 3 7 10

TRS0056 Caudal type of homeotic transcription factors DNA-binding 0 0 3 3

TRS0057 Even-skipped type of homeotic transcription factors DNA-binding 0 2 0 2

TRS0059 Msh type of homeotic transcription factors DNA-binding 0 1 2 3

TRS0060 Myb-type transcription factors (2) DNA-binding 2 0 6 8

TRS0061 Myb-type transcription factors (3) DNA-binding 0 0 6 6

TRS0062 Myb-type transcription factors (1) DNA-binding 1 0 5 6

TRS0063 RUNT transcription factors DNA-binding 0 13 4 17

TRS0066 Zinc Ribbon (TFIIS) transcription factors DNA-binding 415 24 6 445

TRS0067 Poly(ADP-ribose) polymerase zinc finger transcription factors DNA-binding 10 5 2 17

TRS0068 Some RING-type zinc fingers Prot-prot interaction 1176 198 6 1380

TRS0071 RF-X transcription factors Prot-prot interaction 2 0 1 3

TRS0072 RF-X transcription factors Unknown 0 0 2 2

TRS0073 RF-X transcription factors Unknown 3 0 2 5

TRS motifs numbers in different Eukaryote Proteomes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro.

All Probs
InterPro All Probs/ProtLoc
InterPro Very Probable
InterPro Very Probable/ProtLoc
InterPro

1937
Incognito 356
784
Incognito 136
49
Incognito 21
37
Incognito 13

6889
Incognito 1131
1947
Incognito 309
443
Incognito 281
330
Incognito 222

1352
Incognito 94
893
Incognito 50
799
Incognito 446
487
Incognito 206

Total 10178 3624 1291 854

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against GOA.

All Probs
GOA All Probs/ProtLoc
GOA Very Probable
GOA Very Probable/ProtLoc
GOA

7132
Incognito 1444
2687
Incognito 455
961
Incognito 723
603
Incognito 427

2449
Incognito 123
471
Incognito 32
45
Incognito 7
26
Incognito 6

597
Incognito 14
466
Incognito 8
285
Incognito 18
225
Incognito 8

Total 10178 3624 1291 854

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro & GOA.

All Probs
InterPro & GOA All Probs/ProtLoc
InterPro & GOA Very Probable
InterPro & GOA Very Probable/ProtLoc
InterPro & GOA

1746
Incognito 352
737
Incognito 134
36
Incognito 20
26
Incognito 13

6987
Incognito 1135
1926
Incognito 311
427
Incognito
319
Incognito 222

1445
Incognito 94
961
Incognito 50
828
Incognito 447
509
Incognito 206

Total 10178 3624 1291 854

Symbol Codes

All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc

1633 505 754 442

Symbol Codes

All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc

Entries with predicted Transcription Factor associated motifs but not common Transcription Factor motifs (DNA-binding ones) 771 177 12 4

Centre Proteòmica i Bioinformàtica Aplicada

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	All Probs InterPro	All Probs/ProtLoc InterPro	Very Probable InterPro	Very Probable/ProtLoc InterPro
	1937 Incognito 356	784 Incognito 136	49 Incognito 21	37 Incognito 13
	6889 Incognito 1131	1947 Incognito 309	443 Incognito 281	330 Incognito 222
	1352 Incognito 94	893 Incognito 50	799 Incognito 446	487 Incognito 206
Total	10178	3624	1291	854

	All Probs GOA	All Probs/ProtLoc GOA	Very Probable GOA	Very Probable/ProtLoc GOA
	7132 Incognito 1444	2687 Incognito 455	961 Incognito 723	603 Incognito 427
	2449 Incognito 123	471 Incognito 32	45 Incognito 7	26 Incognito 6
	597 Incognito 14	466 Incognito 8	285 Incognito 18	225 Incognito 8
Total	10178	3624	1291	854

	All Probs InterPro & GOA	All Probs/ProtLoc InterPro & GOA	Very Probable InterPro & GOA	Very Probable/ProtLoc InterPro & GOA
	1746 Incognito 352	737 Incognito 134	36 Incognito 20	26 Incognito 13
	6987 Incognito 1135	1926 Incognito 311	427 Incognito	319 Incognito 222
	1445 Incognito 94	961 Incognito 50	828 Incognito 447	509 Incognito 206
Total	10178	3624	1291	854

	POSSIBLE	PROBABLE	VERY PROBABLE
TranScout detected	5410	4236	1303

TRS	Signature	Function	Possible	Probable	Very Probable	Total
TRS0001	Cys2His2 zinc finger transcription factors	DNA-binding	6603	13086	3637	23326
TRS0002	Progesterone-type Cys4 zinc finger transcription factors	DNA-binding	0	1	0	1
TRS0005	Retinoic acid-type Cys4 zinc finger transcription factors	DNA-binding	0	6	0	6
TRS0006	Thyroid receptor-type Cys4 zinc finger transcription factors	DNA-binding	5	0	0	5
TRS0007	Vitamin D-type Cys4 zinc finger transcription factors	DNA-binding	0	0	2	2
TRS0009	PPAR-type Cys4 zinc finger transcription factors	DNA-binding	0	3	0	3
TRS0012	HNF-type Cys4 zinc finger transcription factors	DNA-binding	3	0	0	3
TRS0014	Abd_b type of homeotic transcription factors	DNA-binding	23	3	12	38
TRS0015	Antennapedia type of homeotic transcription factors	DNA-binding	96	18	27	141
TRS0017	Engrailed type of homeotic transcription factors	DNA-binding	0	0	2	2
TRS0018	LIM type of homeotic transcription factors	DNA-binding	8	5	11	24
TRS0019	NK1 type of homeotic transcription factors	DNA-binding	0	3	0	3
TRS0020	NK2 type of homeotic transcription factors	DNA-binding	3	4	3	10
TRS0021	NK3 type of homeotic transcription factors	DNA-binding	0	0	2	2
TRS0022	Paired type of homeotic transcription factors	DNA-binding	8	17	30	55
TRS0023	POU type of homeotic transcription factors	DNA-binding	3	7	15	25
TRS0024	IclR family of transcription factors	DNA-binding	18	18	2	38
TRS0025	Homeotic transcription factors	DNA-binding	28	131	96	255
TRS0026	bZIP transcription factors	DNA-binding	72	39	0	111
TRS0028	RF-X transcription factors	DNA-binding	0	0	6	6
TRS0029	Heat shock transcription factors	DNA-binding	7	0	6	13
TRS0030	Fork head / winged helix transcription factors	DNA-binding	422	671	34	1127
TRS0031	MADS transcription factors	DNA-binding	4	8	0	12
TRS0032	TATA-binding proteins	DNA-binding	0	1	1	2
TRS0034	Cys4 zinc finger transcription factors	DNA-binding	12	47	4	63
TRS0035	Cys4 GATA-type zinc finger transcription factors	DNA-binding	9	167	20	196
TRS0036	Cys6 zinc finger transcription factors	DNA-binding	1	8	0	9
TRS0037	C3HC4 (RING) zinc finger transcription factors	DNA-binding	11	8	0	19
TRS0039	CCHC zinc finger transcription factors	DNA-binding	36	12	0	48
TRS0040	LysR family of transcription factors	DNA-binding	10	6	0	16
TRS0041	LacI family of transcription factors	DNA-binding	1707	246	5	1958
TRS0042	GntR family of transcription factors	DNA-binding	8	2	0	10
TRS0043	ArsR family of transcription factors	DNA-binding	50	24	2	76
TRS0044	MerR family of transcription factors	DNA-binding	20	2	0	22
TRS0045	AraC family of transcription factors	DNA-binding	33	20	0	53
TRS0046	MAR family of transcription factors	DNA-binding	26	1	0	27
TRS0047	TetR family of transcription factors	DNA-binding	274	117	7	398
TRS0048	LuxR family of transcriptional activator	DNA-binding	107	10	0	117
TRS0049	AsnC-like transcription activators	DNA-binding	0	3	2	5
TRS0050	bZIP basic domain of Jun type	DNA-binding	0	2	0	2
TRS0051	Some homeotic transcription factors	Zinc binding	148	428	126	702
TRS0052	Variety of transcription factors	Assembly/activation	7	39	15	61
TRS0053	CCAAT-binding factors (CBF-A)	DNA-binding	0	1	1	2
TRS0054	Corticoid-type Cys4 zinc finger transcription factors	DNA-binding	2	2	0	4
TRS0055	Estrogen-type Cys4 zinc finger transcription factors	DNA-binding	0	3	7	10
TRS0056	Caudal type of homeotic transcription factors	DNA-binding	0	0	3	3
TRS0057	Even-skipped type of homeotic transcription factors	DNA-binding	0	2	0	2
TRS0059	Msh type of homeotic transcription factors	DNA-binding	0	1	2	3
TRS0060	Myb-type transcription factors (2)	DNA-binding	2	0	6	8
TRS0061	Myb-type transcription factors (3)	DNA-binding	0	0	6	6
TRS0062	Myb-type transcription factors (1)	DNA-binding	1	0	5	6
TRS0063	RUNT transcription factors	DNA-binding	0	13	4	17
TRS0066	Zinc Ribbon (TFIIS) transcription factors	DNA-binding	415	24	6	445
TRS0067	Poly(ADP-ribose) polymerase zinc finger transcription factors	DNA-binding	10	5	2	17
TRS0068	Some RING-type zinc fingers	Prot-prot interaction	1176	198	6	1380
TRS0071	RF-X transcription factors	Prot-prot interaction	2	0	1	3
TRS0072	RF-X transcription factors	Unknown	0	0	2	2
TRS0073	RF-X transcription factors	Unknown	3	0	2	5

	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
	1633	505	754	442

TrSDB Analyses

Mus musculus Proteome statistics