P42003 : Mothers against dpp protein
P42283 : Lola protein, long isoform (Longitudinals lacking protein)
P13054 : Knirps-related protein
P07247 : Krueppel protein
P10734 : Zygotic gap protein knirps
P05084 : Hunchback protein
P49866 : Transcription factor HNF-4 homolog (dHNF4)
P31396 : Probable nuclear hormone receptor HR3 (dHR3)
Q24142 : Nuclear hormone receptor HR78 (dHR78) (Nuclear receptor XR78E/F)
Q24143 : Nuclear hormone receptor HR96 (dHR96)
P10035 : Homeobox protein H2.0
P13360 : Glass protein
P91623 : GATA-binding factor-C (Transcription factor GATA-C) (dGATA-C) (Grain protein)
Q08605 : Transcription factor GAGA (Trithorax-like protein)
P33244 : Nuclear hormone receptor FTZ-F1 (FTZ-F1 alpha)
Q05192 : Nuclear hormone receptor FTZ-F1 beta (dHR39)
P15370 : Embryonic gonad protein (Eagle protein) (Spready protein)
P13055 : Ecdysone-induced protein 75B isoform C (E75-C)
P45447 : Ecdysone-induced protein 78C (DR-78)
P34021 : Ecdysone receptor (Ecdysteroid receptor) (20-hydroxy-ecdysone receptor) (20E receptor)
P23023 : Doublesex protein
Q24266 : Transcription factor BTD (Buttonhead protein)
P39768 : Pair-rule protein odd-paired
Q24180 : Deformed epidermal autoregulatory factor 1 (DEAF-1 protein)
P51521 : Ovo protein (Shaven baby protein)
Q8ST83 : Polycomb protein PHO (Pleiohomeotic protein) (Transcription factor YY1 homolog)
P52168 : GATA-binding factor-A (Transcription factor GATA-A) (dGATA-A) (Pannier protein)
P04052 : DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)
P39770 : Homeotic protein spalt-major
P09077 : Homeotic Sex combs reduced protein
O96433 : Cyclin T
P52172 : Box A-binding factor (ABF) (Serpent protein) (GATA-binding factor-B) (Transcription factor GATA-B) (dGATA-B)
P15619 : Serendipity locus protein H-1 (Wings-down protein)
P40798 : Shuttle craft protein
P92189 : Stand still protein
P40657 : Putative transcription factor SOX-15 (Sox50E)
P20227 : Transcription initiation factor TFIID (TATA-box factor) (TATA sequence-binding protein) (TBP) (TATA-box binding protein)
P20232 : Transcription elongation factor S-II (RNA polymerase II elongation factor DMS-II) (TFIIS)
P18102 : Tailless protein
P20659 : Trithorax protein
P22265 : Teashirt protein
P17789 : Tramtrack protein, beta isoform (Tramtrack p69) (Fushi tarazu repressor protein)
P20153 : Ultraspiracle protein (XR2C) (Chorion factor 1)
Q8T053 : Hypothetical zinc finger protein CG2678 in chromosome 3
P28166 : Zinc-finger protein 1 (Zinc-finger homeodomain protein 1)
P28167 : Zinc-finger protein 2 (Zinc-finger homeodomain protein 2)
P20385 : Chorion transcription factor Cf2, isoforms I and II
P29673 : Apterous protein
P39413 : Adult enhancer factor 1 (AEF-1)
P19538 : Cubitus interruptus protein
Q24174 : Abrupt protein (Clueless protein)
P16375 : Steroid receptor seven-up type 1
Q8T8P9 : SD09488p (CG5109 protein)
Q960I3 : LP06732p (CG10897-PC)
O96880 : TFIIEALPHA protein (GH11150p)
Q8MKZ9 : CG10897-PD
Q8SWW7 : LD26392p (CG3726 protein)
Q8IQT5 : CG4059-PA
Q8IQS3 : CG8127-PC
Q8IPF2 : CG9310-PB
Q8INC6 : CG3992-PB
Q8IMZ1 : CG17077-PD
Q8IMG3 : CG1815-PB
Q8IMD4 : CG10897-PB
Q8IN81 : Sex determination protein fruitless
P09090 : Zerknuellt protein 2 (ZEN-2)
P09087 : Homeobox protein abdominal-B (P3) (Infraabdominal 7) (IAB-7) (PH189)
P02833 : Homeotic antennapedia protein
P02835 : Segmentation protein fushi tarazu
P29555 : Homeobox protein abdominal-A
P31264 : Homeotic proboscipedia protein
P06601 : Segmentation protein paired
P10181 : Homeobox protein rough
Q03372 : Muscle segmentation homeobox (Protein Drop)
P22711 : Muscle-specific homeobox protein tinman (Msh-2) (NK-4)
P02834 : Homeotic Ultrabithorax protein
P09089 : Zerknuellt protein 1 (ZEN-1)
P09081 : Homeotic bicoid protein (PRD-4)
P22809 : Homeobox protein bagpipe (NK-3)
P09085 : Homeotic caudal protein
P07548 : Homeotic deformed protein
P20009 : Homeotic distal-less protein (Protein brista)
P02836 : Segmentation polarity homeobox protein engrailed
P18488 : Empty spiracles homeotic protein
P06602 : Segmentation protein even-skipped
P05527 : Homeobox protein invected
P10105 : Homeotic labial protein (F24) (F90-2)
P22807 : Homeobox protein slou (S59/2) (Slouch protein) (Homeobox protein NK-1)
P22808 : Homeobox protein vnd (Ventral nervous system defective protein) (Homeobox protein NK-2)
P09083 : Gooseberry neuro protein (Gooseberry proximal protein) (BSH4)
Q04787 : Brain-specific homeobox protein
P56672 : Homeobox protein orthopedia
O18400 : Pituitary homeobox 1 homolog (D-PTX1)
Q06453 : Homeobox protein aristaless
Q26441 : RK2 protein (GH05443P) (Fragment)
Q8T0H1 : LD04235p (CG1897 protein)
Q8T0M4 : GH22493p (CG10704 protein)
Q95TN3 : LD36304p (Bicoid) (CG1034-PD)
P22810 : Homeotic protein orthodenticle (Ocelliless protein)
P09082 : Gooseberry protein (Gooseberry distal protein) (BSH9)
P54366 : Homeobox protein goosecoid
O18381 : Paired box protein Pax-6 (Eyeless protein)
O77215 : UNC-4 protein
P24350 : Inhibitory POU protein (I-POU) (Abnormal chemosensory jump 6 protein)
P31368 : Nubbin protein (Twain protein) (POU domain protein 1) (PDM-1) (DPOU-19) (DOCT1)
P31369 : POU domain protein 2 (didymous protein) (Pdm-2) (dPOU-28) (dOct2) (miti-mere)
P16241 : POU-domain protein CF1A (Chorion factor 1A) (CF1-A) (Ventral veins lacking protein) (Drifter protein)
P10180 : Homeobox protein cut
P40427 : Homeobox protein extradenticle
P54269 : Homeobox protein caupolican
Q95RW8 : Optix protein (Homeobox protein SIX3)
Q27350 : Sine oculis protein
Q24248 : Homeobox protein araucan
Q8MLT5 : CG5799-PD
Q8MLT7 : CG5799-PC
Q8IQ08 : CG2808-PA
P39572 : Giant protein
P21525 : Transcription factor dFra (Fos-related antigen) (AP-1) (Kayak protein)
Q24167 : Similar protein
Q24119 : Trachealess protein
Q02637 : CCAAT/enhancer binding protein (C/EBP) (Slow border cell protein)
P18289 : Transcription factor AP-1 (Jun-related antigen) (dJRA) (dJun)
P29747 : Cyclic-AMP response element binding protein A (Box B binding factor-2) (BBF-2)
P20482 : Segmentation protein cap'n'collar
Q8MLW7 : CG9415-PB
Q24217 : PAR domain protein 1
Q8SZT1 : GH27708p (CG17888-PD)
Q8IQ99 : CG17888-PH
Q8IQ98 : CG17888-PC
Q8IPK6 : CG14029-PB
Q8IN74 : CG17836-PC
P22813 : Heat shock factor protein (HSF) (Heat shock transcription factor) (HSTF)
P14734 : Fork head protein
Q02360 : Fork head domain protein FD2
Q02361 : Fork head domain protein FD3
P32028 : Fork head domain protein FD4
P32029 : Fork head domain protein FD5
P32030 : Fork head domain transcription factor slp1 (Sloppy paired locus protein 1)
P32031 : Fork head domain transcription factor slp2 (Sloppy paired locus protein 2)
P40656 : Putative transcription factor SOX-14
P32027 : Fork head domain protein crocodile (FKH protein FD1)
Q8ML45 : CG8815-PB
Q8ML44 : CG8815-PD
Q8IRT6 : CG32788-PB
Q8IQE9 : CG11799-PE
Q8IMA2 : CG32006-PA
P40791 : Myocyte-specific enhancer factor 2 (MADS domain transcription factor D-mef2)
P49869 : Probable nuclear hormone receptor HR38 (dHR38)
Q8MLA0 : CG16801-PB
Q02308 : Hairless protein
P07663 : Period circadian protein (Clock-6 protein) (CLK-6)
Q24535 : Serum response factor homolog (DSRF) (Blistered protein)
Q8IQS2 : CG8127-PA