P42003 : Mothers against dpp protein
P13054 : Knirps-related protein
P10734 : Zygotic gap protein knirps
P49866 : Transcription factor HNF-4 homolog (dHNF4)
P31396 : Probable nuclear hormone receptor HR3 (dHR3)
Q24142 : Nuclear hormone receptor HR78 (dHR78) (Nuclear receptor XR78E/F)
Q24143 : Nuclear hormone receptor HR96 (dHR96)
P10035 : Homeobox protein H2.0
P91623 : GATA-binding factor-C (Transcription factor GATA-C) (dGATA-C) (Grain protein)
P33244 : Nuclear hormone receptor FTZ-F1 (FTZ-F1 alpha)
Q05192 : Nuclear hormone receptor FTZ-F1 beta (dHR39)
P15370 : Embryonic gonad protein (Eagle protein) (Spready protein)
P13055 : Ecdysone-induced protein 75B isoform C (E75-C)
P45447 : Ecdysone-induced protein 78C (DR-78)
P34021 : Ecdysone receptor (Ecdysteroid receptor) (20-hydroxy-ecdysone receptor) (20E receptor)
P23023 : Doublesex protein
Q95029 : Cathepsin L precursor (EC 3.4.22.15) (Cysteine proteinase 1)
Q9NJB5 : Homeobox protein onecut
P52168 : GATA-binding factor-A (Transcription factor GATA-A) (dGATA-A) (Pannier protein)
Q9V9W8 : Pygopus protein (Gammy legs protein)
P04052 : DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)
P36958 : DNA-directed RNA polymerase II 15.1 kDa polypeptide (EC 2.7.7.6)
P09077 : Homeotic Sex combs reduced protein
P52172 : Box A-binding factor (ABF) (Serpent protein) (GATA-binding factor-B) (Transcription factor GATA-B) (dGATA-B)
P40798 : Shuttle craft protein
P40657 : Putative transcription factor SOX-15 (Sox50E)
P20227 : Transcription initiation factor TFIID (TATA-box factor) (TATA sequence-binding protein) (TBP) (TATA-box binding protein)
P20232 : Transcription elongation factor S-II (RNA polymerase II elongation factor DMS-II) (TFIIS)
P18102 : Tailless protein
P20659 : Trithorax protein
P17789 : Tramtrack protein, beta isoform (Tramtrack p69) (Fushi tarazu repressor protein)
P20153 : Ultraspiracle protein (XR2C) (Chorion factor 1)
P28166 : Zinc-finger protein 1 (Zinc-finger homeodomain protein 1)
P28167 : Zinc-finger protein 2 (Zinc-finger homeodomain protein 2)
P29673 : Apterous protein
Q9W0U2 : CG7036 protein
Q9VTW5 : CG32105 protein
Q9VAI8 : CG15504 protein
Q9VCZ5 : CG7045 protein
Q9VNH0 : CG2102 protein (LD36057P)
Q9VSE9 : CG7404 protein (GH28308P) (Estrogen-related receptor)
Q9W4W7 : EG:100G10.6 protein (RE68603p)
P16375 : Steroid receptor seven-up type 1
Q9V602 : CG10897 protein
Q8T8P9 : SD09488p (CG5109 protein)
Q9VXS6 : CG8117 protein
Q9VRN5 : CG17334 protein (RE05342p) (RNA-binding protein LIN-28)
Q9V7H6 : CG8388 protein
Q9N6D8 : Transcription factor p53 (P53 tumor suppressor-like protein) (P53 protein) (P53-like regulator of apoptosis and cell cycle) (GH11591p)
Q9VJE3 : CG15141 protein (LD24839P)
Q9VLA5 : GCM protein
Q9VFW0 : CG8870 protein
Q9VVS8 : CG4059 protein
Q9VEZ8 : CG3978 protein
Q9V960 : CG10438 protein
Q9VJ00 : CG10699 protein
Q9VM15 : CG5229 protein
Q9V4J4 : CG1845 protein (GH12223p)
Q9W539 : CG16902 protein
Q9W4F9 : CG32772 protein
Q9VJL0 : CHIF protein
Q9VAQ1 : CG11305 protein
Q9VLA2 : CG3858 protein (Glide2)
Q9VG53 : CG18553 protein
Q9V9V2 : CG1856 protein
Q9VXW7 : CG6211 protein
Q9VFL1 : Trx protein
Q9VMJ3 : CG11607 protein
Q9NK53 : Chif protein
Q9VA40 : ZFH1 protein
Q9VKW2 : CG5354 protein (LD12022P)
Q9VZF2 : CG15011 protein
Q9VGL2 : CG14711 protein
Q9VJ02 : LIM3 protein
Q9VXM0 : CG8909 protein
Q9VNF7 : CG2244 protein
Q9V736 : CG12864 protein
Q9V4D7 : Zfh2 protein
Q9VPX4 : CG5041 protein
Q9W0C3 : CG13928 protein (GH11843p)
Q9W321 : CG15319 protein
Q9VZM0 : CG1072 protein
Q9VK34 : SIR2 protein
Q9V9V5 : CG1815 protein
Q9V9T4 : ACF1 protein
Q960I3 : LP06732p (CG10897-PC)
Q9V841 : Misexpression suppressor of ras 4 protein
Q9W186 : NVY protein
Q9VCZ4 : CG7046 protein
Q9VA39 : ZFH1 protein
Q9V795 : CG8092 protein
Q9VJ73 : CG10414 protein (LD17982p)
Q9VBB3 : CG5491 protein (RE11768p)
Q9VC36 : CG11375 protein
Q9V7N4 : CG4282 protein
Q9VGA4 : CG10042 protein (SD10773p)
Q9VG78 : CG6525 protein
Q9VC55 : ASH2 protein
Q9VMJ7 : CG9088 protein (LD40310p)
Q9VRV2 : CG7376 protein
O96880 : TFIIEALPHA protein (GH11150p)
Q9V636 : CG13188 protein
Q9VF00 : CG10278 protein
Q9VMD4 : CG16947 protein
Q9VYA6 : CG11172 protein
Q9VDF1 : CG5737 protein
Q9V6D2 : CG13151 protein
Q9VNF6 : CG2244 protein
Q9VF01 : SRP protein (SD07261p)
Q9VW15 : Ash1 protein
Q9VID9 : CG8677 protein
Q9VYX2 : CG11696 protein (LD18373P)
Q9W410 : CG3815 protein (GH06635p)
Q9VTT9 : CG11534 protein (GH12489P)
Q9W1H0 : CG5591 protein
Q9VI12 : CG10296 protein
Q9VSK3 : CG7015 protein
Q9W352 : CG17446 protein
Q8MKZ9 : CG10897-PD
Q9V453 : BG:DS03323.1 protein
Q9VD81 : CG13418 protein
Q9VQZ8 : CG15439 protein
Q9W1A9 : CG11290 protein
Q9VI63 : CG1070 protein (Alhambra)
Q9VTW3 : CG4328 protein
Q9VZ63 : CG2202 protein
Q9VKZ0 : CG5034 protein
Q8SWW7 : LD26392p (CG3726 protein)
Q9VML1 : DSF protein
Q9VJ37 : TUP protein
Q9VEN8 : DAD protein
Q9VDK5 : CG5206-PA
Q9VB55 : CG5965-PA
Q9Y0Z9 : TAILUP (CG10619-PB)
Q8WS79 : Estrogen-related receptor splice variant (CG7404-PB)
Q8IRR5 : CG3187-PC
Q8IRC7 : CG1072-PB
Q8IQT5 : CG4059-PA
Q8IQS3 : CG8127-PC
Q8IPF2 : CG9310-PB
Q8INC6 : CG3992-PB
Q8IMZ1 : CG17077-PD
Q8IMG3 : CG1815-PB
Q8IMD4 : CG10897-PB
Q9VYD1 : CG1716 protein
P09090 : Zerknuellt protein 2 (ZEN-2)
P09087 : Homeobox protein abdominal-B (P3) (Infraabdominal 7) (IAB-7) (PH189)
P02833 : Homeotic antennapedia protein
P02835 : Segmentation protein fushi tarazu
P29555 : Homeobox protein abdominal-A
Q9V3Q3 : SCR protein
P31264 : Homeotic proboscipedia protein
P06601 : Segmentation protein paired
P10181 : Homeobox protein rough
Q03372 : Muscle segmentation homeobox (Protein Drop)
P22711 : Muscle-specific homeobox protein tinman (Msh-2) (NK-4)
P02834 : Homeotic Ultrabithorax protein
P09089 : Zerknuellt protein 1 (ZEN-1)
P09081 : Homeotic bicoid protein (PRD-4)
P22809 : Homeobox protein bagpipe (NK-3)
P09085 : Homeotic caudal protein
P07548 : Homeotic deformed protein
P20009 : Homeotic distal-less protein (Protein brista)
P02836 : Segmentation polarity homeobox protein engrailed
P18488 : Empty spiracles homeotic protein
P06602 : Segmentation protein even-skipped
P05527 : Homeobox protein invected
P10105 : Homeotic labial protein (F24) (F90-2)
P22807 : Homeobox protein slou (S59/2) (Slouch protein) (Homeobox protein NK-1)
P22808 : Homeobox protein vnd (Ventral nervous system defective protein) (Homeobox protein NK-2)
P09083 : Gooseberry neuro protein (Gooseberry proximal protein) (BSH4)
Q04787 : Brain-specific homeobox protein
P56672 : Homeobox protein orthopedia
O18400 : Pituitary homeobox 1 homolog (D-PTX1)
Q9W2Q1 : Retinal homeobox protein Rx (DRx1) (DRx)
Q06453 : Homeobox protein aristaless
Q9W1H7 : PHDP protein
Q9VEI8 : CG5832 protein
Q9VX55 : B-H2 protein
Q9VI44 : CG31481 protein
Q9XZU0 : PPH13 protein
Q9VTX7 : CG10488 protein
Q9VDA2 : LBL protein
Q9W5F0 : VND protein
Q26441 : RK2 protein (GH05443P) (Fragment)
Q9VEA3 : CG18599 protein
Q9VWH1 : CG32532 protein
Q9VX20 : ODSH protein
Q9W3C6 : CG11294 protein
Q9VCY0 : BTN protein
Q9VDF0 : CG7056 protein
Q9V552 : UNPG protein
Q9VFQ3 : CG9930 protein
Q9VD99 : C15 protein (311 protein) (CG7937 protein)
Q9VSC2 : CG8254 protein (RE39081p)
Q9W064 : CG12361 protein
Q9W1U7 : CG9876 protein
Q9UAM0 : Homeotic bicoid protein (CG1034 protein)
Q9V943 : CG13424 protein
Q9VFK4 : CG8524 protein
Q9NHP8 : GTX/Nkx6B-like homeodomain protein (CG13475 protein)
Q8T0H1 : LD04235p (CG1897 protein)
Q9W4B4 : CG15782 protein
Q9VX54 : B-H1 protein (GH07238P)
Q8T0M4 : GH22493p (CG10704 protein)
Q95TN3 : LD36304p (Bicoid) (CG1034-PD)
Q9VDA1 : LADYBIRD early homeodomain transcription factor (LBE protein)
P22810 : Homeotic protein orthodenticle (Ocelliless protein)
P09082 : Gooseberry protein (Gooseberry distal protein) (BSH9)
P54366 : Homeobox protein goosecoid
O18381 : Paired box protein Pax-6 (Eyeless protein)
Q9V490 : CG11186 protein
O77215 : UNC-4 protein
Q9W4B2 : CG4136 protein
Q9VKY5 : CG5369 protein
P24350 : Inhibitory POU protein (I-POU) (Abnormal chemosensory jump 6 protein)
P31368 : Nubbin protein (Twain protein) (POU domain protein 1) (PDM-1) (DPOU-19) (DOCT1)
P31369 : POU domain protein 2 (didymous protein) (Pdm-2) (dPOU-28) (dOct2) (miti-mere)
P16241 : POU-domain protein CF1A (Chorion factor 1A) (CF1-A) (Ventral veins lacking protein) (Drifter protein)
Q9V4S5 : CG11641 protein (AT16994p)
P10180 : Homeobox protein cut
P40427 : Homeobox protein extradenticle
P54269 : Homeobox protein caupolican
Q95RW8 : Optix protein (Homeobox protein SIX3)
Q27350 : Sine oculis protein
Q24248 : Homeobox protein araucan
Q9W268 : DVE protein
Q9VU01 : MIRR protein
Q9VPL4 : CG11617 protein (RE08174p)
Q9VDH9 : CG15696 protein
Q8MLT5 : CG5799-PD
Q8MLT7 : CG5799-PC
Q9Y1P6 : Homeobox protein SIX4 (MYOTONIX) (CG3871 protein)
Q8IQ08 : CG2808-PA
P39572 : Giant protein
P21525 : Transcription factor dFra (Fos-related antigen) (AP-1) (Kayak protein)
Q24167 : Similar protein
Q24119 : Trachealess protein
Q02637 : CCAAT/enhancer binding protein (C/EBP) (Slow border cell protein)
P18289 : Transcription factor AP-1 (Jun-related antigen) (dJRA) (dJun)
P29747 : Cyclic-AMP response element binding protein A (Box B binding factor-2) (BBF-2)
P20482 : Segmentation protein cap'n'collar
Q9VE23 : CG17836 protein
Q9XZS8 : A3-3 protein
Q9V958 : CG9954 protein
Q8MLW7 : CG9415-PB
Q24217 : PAR domain protein 1
Q9VCP6 : CG17894 protein
Q9VID3 : CG8669 protein
Q9W3U4 : CG4575 protein
Q9V7L1 : CG7786 protein
Q9VCP8 : CG17894 protein
Q9VWW0 : CREBB-17A protein
Q9VMS4 : VRI protein
Q9VUQ4 : CREBA protein
Q9W2K9 : CG9415 protein
Q8SZT1 : GH27708p (CG17888-PD)
Q9TW49 : PAR domain protein 1-beta (CG17888-PE)
Q9NBW7 : Fos-related antigen (CG15509-PA)
Q9TVQ4 : PAR domain protein 1-gamma (CG17888-PF)
Q9VC61 : CG13624-PA (SD09792p)
Q9NIR3 : CRC-B (GH11210p) (CG8669-PB)
Q8IQY4 : CG6103-PA
Q8IQ99 : CG17888-PH
Q8IQ98 : CG17888-PC
Q8IPK6 : CG14029-PB
Q8IN74 : CG17836-PC
Q9VGZ6 : Rfx protein
P22813 : Heat shock factor protein (HSF) (Heat shock transcription factor) (HSTF)
P14734 : Fork head protein
Q02360 : Fork head domain protein FD2
Q02361 : Fork head domain protein FD3
P32028 : Fork head domain protein FD4
P32029 : Fork head domain protein FD5
P32030 : Fork head domain transcription factor slp1 (Sloppy paired locus protein 1)
P32031 : Fork head domain transcription factor slp2 (Sloppy paired locus protein 2)
P40656 : Putative transcription factor SOX-14
P32027 : Fork head domain protein crocodile (FKH protein FD1)
Q8ML45 : CG8815-PB
Q9VS05 : CG18647 protein
Q9VTF7 : CG11799 protein
Q9XTP7 : DOM protein (Winged-helix NUDE transcription factor) (Winged-helix protein JUMEAUX) (LD24749P)
Q9V899 : CG5076 protein
Q9W3Q5 : CG12690 protein
Q8ML44 : CG8815-PD
Q9V481 : CG11152 protein
Q9W4Q1 : CG32779 protein
Q9VEB9 : CG7187 protein
Q9VFN8 : CG3143 protein (FKHR protein)
Q9VQI9 : CG8817 protein (Lilliputian)
Q9W5X5 : CG9571 protein
Q9W2I0 : CG30387 protein
Q9VH87 : CG16899 protein
Q9V6E1 : CG8815 protein
Q8IRT6 : CG32788-PB
Q8IQE9 : CG11799-PE
Q8IMA2 : CG32006-PA
P40791 : Myocyte-specific enhancer factor 2 (MADS domain transcription factor D-mef2)
Q27896 : TBP-related factor
P49869 : Probable nuclear hormone receptor HR38 (dHR38)
Q8MLA0 : CG16801-PB
Q9V7B3 : CG16801 protein
Q24535 : Serum response factor homolog (DSRF) (Blistered protein)
Q9W0T2 : CG32346 protein
O97159 : Chromodomain helicase-DNA-binding protein Mi-2 homolog (dMi-2)
Q9VTT6 : CG17152 protein
Q9W0Z5 : CG30420 protein (LD34489p)
Q9W2V3 : CG2885 protein
Q9V4C3 : CG2380 protein
Q9VZ00 : CG1737 protein
Q9VUB5 : CG9007 protein
Q8IQS2 : CG8127-PA
Q9VTH0 : CG6199 protein
Q9VA17 : CG15552 protein
Q9VRB1 : CG1379 protein
Q9VRA8 : CG15455 protein
P07207 : Neurogenic locus Notch protein precursor
P49735 : DNA replication licensing factor MCM2
Q26454 : DNA replication licensing factor MCM4 (Disc proliferation abnormal protein)
Q8MT36 : Potential histone methyltransferase Mes-4 (Maternal-effect sterile 4)
P42283 : Lola protein, long isoform (Longitudinals lacking protein)
P07247 : Krueppel protein
P05084 : Hunchback protein
P13360 : Glass protein
Q08605 : Transcription factor GAGA (Trithorax-like protein)
P42124 : Polycomb protein E(Z) (Enhancer of zeste protein)
Q24266 : Transcription factor BTD (Buttonhead protein)
P39768 : Pair-rule protein odd-paired
Q24180 : Deformed epidermal autoregulatory factor 1 (DEAF-1 protein)
P51521 : Ovo protein (Shaven baby protein)
Q8ST83 : Polycomb protein PHO (Pleiohomeotic protein) (Transcription factor YY1 homolog)
Q24472 : Retinoblastoma-family protein
P39770 : Homeotic protein spalt-major
O96433 : Cyclin T
P07665 : Serendipity locus beta protein
P15619 : Serendipity locus protein H-1 (Wings-down protein)
P07664 : Serendipity locus delta protein
P92189 : Stand still protein
P08970 : Suppressor of hairy wing protein
P22265 : Teashirt protein
Q8T053 : Hypothetical zinc finger protein CG2678 in chromosome 3
P20385 : Chorion transcription factor Cf2, isoforms I and II
P39413 : Adult enhancer factor 1 (AEF-1)
P19538 : Cubitus interruptus protein
Q24174 : Abrupt protein (Clueless protein)
Q8IN81 : Sex determination protein fruitless
Q02308 : Hairless protein
P07663 : Period circadian protein (Clock-6 protein) (CLK-6)