|
|
h |
p |
C |
h |
p |
C |
p |
p |
p |
G |
H |
h |
A |
p |
p |
C |
p |
|
A |
0.00 |
0.00 |
0.00 |
0.20 |
0.00 |
0.00 |
0.00 |
0.00 |
0.16 |
0.00 |
0.00 |
0.00 |
0.83 |
0.00 |
0.00 |
0.00 |
0.00 |
|
C |
0.31 |
0.00 |
1.00 |
0.00 |
0.00 |
1.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
0.00 |
|
D |
0.20 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.37 |
0.00 |
0.00 |
|
E |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.20 |
0.46 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.17 |
0.00 |
0.00 |
|
F |
0.00 |
0.00 |
0.00 |
0.49 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
G |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.45 |
0.00 |
0.00 |
1.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
H |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
I |
0.15 |
0.00 |
0.00 |
0.00 |
0.31 |
0.00 |
0.00 |
0.17 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
K |
0.00 |
0.29 |
0.00 |
0.00 |
0.00 |
0.00 |
0.38 |
0.49 |
0.20 |
0.00 |
0.00 |
0.00 |
0.00 |
0.20 |
0.00 |
0.00 |
0.15 |
|
L |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.32 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
M |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
N |
0.00 |
0.00 |
0.00 |
0.00 |
0.32 |
0.00 |
0.17 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.31 |
0.15 |
0.00 |
0.00 |
|
P |
0.16 |
0.16 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.18 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.37 |
|
Q |
0.18 |
0.20 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.14 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.32 |
0.00 |
0.00 |
|
R |
0.00 |
0.17 |
0.00 |
0.00 |
0.16 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.49 |
0.00 |
0.00 |
0.32 |
|
S |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.16 |
0.00 |
0.00 |
0.00 |
0.00 |
|
T |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.16 |
|
V |
0.00 |
0.18 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
W |
0.00 |
0.00 |
0.00 |
0.17 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.37 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
Y |
0.00 |
0.00 |
0.00 |
0.14 |
0.20 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.31 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
|
gap |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
Matrix
1. PSSM of the motif named CHCC. As an example of the computation of the
values, 0.31 corresponding to Cys in the 1st position is 0.167+0.141 (see the
Voronoi weights for those sequences having a Cys in the 1st position).