TRANSCOUT OUTPUT EXAMPLE 1
 

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TRANSCOUT RESULTS                                       Fri Oct  5 14:59:16 2001
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Identification: unknown

Query sequence: GKEIEEVAFSLFQEFGVENVSMHKIAKTAGVGQGTLYRRYANKIFMPFDQPVRERLRYVLEEIH
                LIVGHHLDWIRMLTISGNLEQTSKVYDCHYSQSLKSQIIRDLLEEAKVKGEANIQDIELTTLC
                MSSPMTPELMFYIHESGYSIEKIAQFASEKQILSVFQRQ

  Function        Classification    Description         Sug. cat.       Score
 

1. DNA-binding     |  Family   | TetR family of tr...   PROBABLE        0.32

Detailed results:

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1. DNA-binding | TetR family of transcription factors   PROBABLE

query:   16 > GVENVSMHKIAKTAGVGQGTLY-RYIF < 45
              |+++++++ +++++ + ++++|    |
motif:        GhpphphphhhpphphpphphYh-p-F

                Score: 8.66

                Normalized score: 0.32

                Max score for this motif: 10.71

                Min score for this motif: 6.27

Thank you for using TranScout.

Example 1. A helix-turn-helix-type regulatory motif was suggested for an ORF previously sequenced by our group. A helix-turn-helix-type regulatory motif was suggested for an ORF previously sequenced by our group.