ACCESSION ANNOTATION INTERPRO GOA TRS Organism: H.sapiens M.musculus R.norvegicus D.melanogaster A.thaliana C.elegans G.theta S.cerevisiae S.pombe Restrict to TranScout Annotated Entries Restrict to InterPro Annotated Entries   Need Help? TranScout Classification Home Analyses Download References Contact About this site TrSDB-current

TrSDB Analyses

Caenorhadbitis elegans Proteome statistics

Proteins predicted with TranScout with their associated probability (at least one domain detected as a given probability). Priority to probabilities is the following one: VERY PROBABLE > PROBABLE > POSSIBLE.

	POSSIBLE	PROBABLE	VERY PROBABLE
TranScout detected	3694	2501	100

Proteins with at least one TRS motif detected by TranScout : 6295
Protein entries in current proteome : 21690


Predicted TranScout motifs by type and probability :

TRS	Signature	Function	Possible	Probable	Very Probable	Total
TRS0001	Cys2His2 zinc finger transcription factors	DNA-binding	3460	1949	5	5414
TRS0014	Abd_b type of homeotic transcription factors	DNA-binding	1	0	0	1
TRS0015	Antennapedia type of homeotic transcription factors	DNA-binding	34	5	2	41
TRS0017	Engrailed type of homeotic transcription factors	DNA-binding	0	1	0	1
TRS0018	LIM type of homeotic transcription factors	DNA-binding	4	1	3	8
TRS0020	NK2 type of homeotic transcription factors	DNA-binding	0	1	1	2
TRS0022	Paired type of homeotic transcription factors	DNA-binding	7	6	6	19
TRS0023	POU type of homeotic transcription factors	DNA-binding	2	1	1	4
TRS0024	IclR family of transcription factors	DNA-binding	9	11	2	22
TRS0025	Homeotic transcription factors	DNA-binding	16	45	27	88
TRS0026	bZIP transcription factors	DNA-binding	71	10	0	81
TRS0029	Heat shock transcription factors	DNA-binding	5	0	1	6
TRS0030	Fork head / winged helix transcription factors	DNA-binding	305	626	10	941
TRS0031	MADS transcription factors	DNA-binding	0	1	0	1
TRS0032	TATA-binding proteins	DNA-binding	0	1	1	2
TRS0034	Cys4 zinc finger transcription factors	DNA-binding	63	20	2	85
TRS0035	Cys4 GATA-type zinc finger transcription factors	DNA-binding	8	98	10	116
TRS0036	Cys6 zinc finger transcription factors	DNA-binding	2	4	0	6
TRS0037	C3HC4 (RING) zinc finger transcription factors	DNA-binding	9	2	0	11
TRS0039	CCHC zinc finger transcription factors	DNA-binding	15	2	0	17
TRS0040	LysR family of transcription factors	DNA-binding	9	3	0	12
TRS0041	LacI family of transcription factors	DNA-binding	1185	127	0	1312
TRS0042	GntR family of transcription factors	DNA-binding	1	0	0	1
TRS0043	ArsR family of transcription factors	DNA-binding	18	6	0	24
TRS0044	MerR family of transcription factors	DNA-binding	11	2	0	13
TRS0045	AraC family of transcription factors	DNA-binding	31	14	0	45
TRS0046	MAR family of transcription factors	DNA-binding	5	2	0	7
TRS0047	TetR family of transcription factors	DNA-binding	205	67	1	273
TRS0048	LuxR family of transcriptional activator	DNA-binding	80	6	0	86
TRS0049	AsnC-like transcription activators	DNA-binding	6	2	0	8
TRS0051	Some homeotic transcription factors	Zinc binding	28	119	36	183
TRS0052	Variety of transcription factors	Assembly/activation	3	19	5	27
TRS0066	Zinc Ribbon (TFIIS) transcription factors	DNA-binding	44	4	1	49
TRS0067	Poly(ADP-ribose) polymerase zinc finger transcription factors	DNA-binding	3	3	0	6
TRS0068	Some RING-type zinc fingers	Prot-prot interaction	743	117	5	865

TRS motifs numbers in different Eukaryote Proteomes


Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro.

	All Probs InterPro	All Probs/ProtLoc InterPro	Very Probable InterPro	Very Probable/ProtLoc InterPro
	1374 Incognito 278	465 Incognito 83	8 Incognito 5	4 Incognito 2
	3912 Incognito 774	881 Incognito 203	29 Incognito 11	17 Incognito 5
	484 Incognito 68	256 Incognito 30	58 Incognito 15	53 Incognito 13
Total	5770	1602	95	74

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against GOA.

	All Probs GOA	All Probs/ProtLoc GOA	Very Probable GOA	Very Probable/ProtLoc GOA
	3185 Incognito 613	977 Incognito 184	34 Incognito 13	20 Incognito 6
	2186 Incognito 449	423 Incognito 108	9 Incognito 3	7 Incognito 1
	399 Incognito 58	202 Incognito 24	52 Incognito 15	47 Incognito 13
Total	5770	1602	95	74

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro & GOA.

	All Probs InterPro & GOA	All Probs/ProtLoc InterPro & GOA	Very Probable InterPro & GOA	Very Probable/ProtLoc InterPro & GOA
	1335 Incognito 269	455 Incognito 80	8 Incognito 5	4 Incognito 2
	3943 Incognito 783	887 Incognito 206	29 Incognito 11	17 Incognito 5
	492 Incognito 68	260 Incognito 30	58 Incognito 15	53 Incognito 13
Total	5770	1602	95	74

Symbol Codes

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	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
	1156	325	33	22

Symbol Codes

	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
Entries with predicted Transcription Factor associated motifs but not common Transcription Factor motifs (DNA-binding ones)	525	129	5	2