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TrSDB Analyses
Schizosaccharomyces pombe Proteome statistics
Proteins predicted with TranScout with their associated probability (at least one domain detected as a given probability). Priority to probabilities is the following one: VERY PROBABLE > PROBABLE > POSSIBLE.
POSSIBLE PROBABLE VERY PROBABLE TranScout detected 836 593 15
Proteins with at least one TRS motif detected by TranScout : 1444
Protein entries in current proteome : 5006
Predicted TranScout motifs by type and probability :
TRS Signature Function Possible Probable Very Probable Total TRS0001 Cys2His2 zinc finger transcription factors DNA-binding 543 343 0 886 TRS0024 IclR family of transcription factors DNA-binding 4 5 1 10 TRS0025 Homeotic transcription factors DNA-binding 1 1 0 2 TRS0026 bZIP transcription factors DNA-binding 5 2 0 7 TRS0029 Heat shock transcription factors DNA-binding 0 1 1 2 TRS0030 Fork head / winged helix transcription factors DNA-binding 83 204 4 291 TRS0032 TATA-binding proteins DNA-binding 0 2 0 2 TRS0033 Copper fist transcription factors DNA-binding 0 0 1 1 TRS0035 Cys4 GATA-type zinc finger transcription factors DNA-binding 0 15 5 20 TRS0036 Cys6 zinc finger transcription factors DNA-binding 7 21 0 28 TRS0037 C3HC4 (RING) zinc finger transcription factors DNA-binding 2 0 0 2 TRS0039 CCHC zinc finger transcription factors DNA-binding 3 1 0 4 TRS0040 LysR family of transcription factors DNA-binding 1 1 0 2 TRS0041 LacI family of transcription factors DNA-binding 321 36 1 358 TRS0042 GntR family of transcription factors DNA-binding 2 0 0 2 TRS0043 ArsR family of transcription factors DNA-binding 8 3 0 11 TRS0044 MerR family of transcription factors DNA-binding 3 1 0 4 TRS0045 AraC family of transcription factors DNA-binding 11 4 0 15 TRS0046 MAR family of transcription factors DNA-binding 2 0 0 2 TRS0047 TetR family of transcription factors DNA-binding 77 22 1 100 TRS0048 LuxR family of transcriptional activator DNA-binding 20 4 0 24 TRS0049 AsnC-like transcription activators DNA-binding 1 0 0 1 TRS0051 Some homeotic transcription factors Zinc binding 6 11 1 18 TRS0052 Variety of transcription factors Assembly/activation 2 7 3 12 TRS0066 Zinc Ribbon (TFIIS) transcription factors DNA-binding 5 3 0 8 TRS0068 Some RING-type zinc fingers Prot-prot interaction 218 32 0 250
TRS motifs numbers in different Eukaryote Proteomes
Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro.
All Probs
InterProAll Probs/ProtLoc
InterProVery Probable
InterProVery Probable/ProtLoc
InterPro260
Incognito 83
83
Incognito 24
0
Incognito 0
0
Incognito 0
949
Incognito 198
283
Incognito 63
6
Incognito 2
1
Incognito 0
85
Incognito 30
56
Incognito 18
7
Incognito 0
7
Incognito 0
Total1294 422 13 8 Symbol Codes
Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against GOA.
All Probs
GOAAll Probs/ProtLoc
GOAVery Probable
GOAVery Probable/ProtLoc
GOA596
Incognito 195
203
Incognito 69
2
Incognito 1
1
Incognito 0
615
Incognito 96
164
Incognito 24
4
Incognito 1
0
Incognito 0
83
Incognito 20
55
Incognito 12
7
Incognito 0
7
Incognito 0
Total1294 422 13 8
Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro & GOA.
All Probs
InterPro & GOAAll Probs/ProtLoc
InterPro & GOAVery Probable
InterPro & GOAVery Probable/ProtLoc
InterPro & GOA215
Incognito 72
70
Incognito 21
0
Incognito 0
0
Incognito 0
981
Incognito 209
288
Incognito 66
6
Incognito 2
1
Incognito 0
98
Incognito 30
64
Incognito 18
7
Incognito 0
7
Incognito 0
Total1294 422 13 8
All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc 326 111 4 2
All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc Entries with predicted Transcription Factor associated motifs but not common Transcription Factor motifs (DNA-binding ones) 150 48 2 2
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