TrSDB

Home
Analyses
Download
References
Contact
About this site
TrSDB-current

TrSDB Analyses

Rattus norvegicus Proteome statistics

Proteins predicted with TranScout with their associated probability (at least one domain detected as a given probability). Priority to probabilities is the following one: VERY PROBABLE > PROBABLE > POSSIBLE.

POSSIBLE PROBABLE VERY PROBABLE

TranScout detected 4169 3203 549

Proteins with at least one TRS motif detected by TranScout : 7921
Protein entries in current proteome : 28313

Predicted TranScout motifs by type and probability :

TRS Signature Function Possible Probable Very Probable Total

TRS0001 Cys2His2 zinc finger transcription factors DNA-binding 4524 4716 666 9906

TRS0002 Progesterone-type Cys4 zinc finger transcription factors DNA-binding 0 1 0 1

TRS0005 Retinoic acid-type Cys4 zinc finger transcription factors DNA-binding 0 3 0 3

TRS0006 Thyroid receptor-type Cys4 zinc finger transcription factors DNA-binding 5 0 0 5

TRS0007 Vitamin D-type Cys4 zinc finger transcription factors DNA-binding 0 0 3 3

TRS0009 PPAR-type Cys4 zinc finger transcription factors DNA-binding 0 5 0 5

TRS0012 HNF-type Cys4 zinc finger transcription factors DNA-binding 3 0 0 3

TRS0014 Abd_b type of homeotic transcription factors DNA-binding 21 1 7 29

TRS0015 Antennapedia type of homeotic transcription factors DNA-binding 76 16 22 114

TRS0017 Engrailed type of homeotic transcription factors DNA-binding 0 0 3 3

TRS0018 LIM type of homeotic transcription factors DNA-binding 6 2 11 19

TRS0019 NK1 type of homeotic transcription factors DNA-binding 0 1 0 1

TRS0020 NK2 type of homeotic transcription factors DNA-binding 1 5 2 8

TRS0021 NK3 type of homeotic transcription factors DNA-binding 0 0 1 1

TRS0022 Paired type of homeotic transcription factors DNA-binding 2 14 27 43

TRS0023 POU type of homeotic transcription factors DNA-binding 1 4 9 14

TRS0024 IclR family of transcription factors DNA-binding 12 17 2 31

TRS0025 Homeotic transcription factors DNA-binding 14 99 84 197

TRS0026 bZIP transcription factors DNA-binding 67 34 0 101

TRS0028 RF-X transcription factors DNA-binding 0 0 6 6

TRS0029 Heat shock transcription factors DNA-binding 5 0 4 9

TRS0030 Fork head / winged helix transcription factors DNA-binding 274 493 31 798

TRS0031 MADS transcription factors DNA-binding 3 2 0 5

TRS0032 TATA-binding proteins DNA-binding 0 1 1 2

TRS0034 Cys4 zinc finger transcription factors DNA-binding 9 53 3 65

TRS0035 Cys4 GATA-type zinc finger transcription factors DNA-binding 10 147 14 171

TRS0036 Cys6 zinc finger transcription factors DNA-binding 0 1 0 1

TRS0037 C3HC4 (RING) zinc finger transcription factors DNA-binding 7 5 0 12

TRS0039 CCHC zinc finger transcription factors DNA-binding 20 25 0 45

TRS0040 LysR family of transcription factors DNA-binding 7 8 0 15

TRS0041 LacI family of transcription factors DNA-binding 1295 207 4 1506

TRS0042 GntR family of transcription factors DNA-binding 2 1 0 3

TRS0043 ArsR family of transcription factors DNA-binding 37 21 5 63

TRS0044 MerR family of transcription factors DNA-binding 17 4 0 21

TRS0045 AraC family of transcription factors DNA-binding 21 18 0 39

TRS0046 MAR family of transcription factors DNA-binding 16 0 0 16

TRS0047 TetR family of transcription factors DNA-binding 258 92 4 354

TRS0048 LuxR family of transcriptional activator DNA-binding 92 1 0 93

TRS0049 AsnC-like transcription activators DNA-binding 0 5 0 5

TRS0050 bZIP basic domain of Jun type DNA-binding 0 2 0 2

TRS0051 Some homeotic transcription factors Zinc binding 65 229 121 415

TRS0052 Variety of transcription factors Assembly/activation 6 44 19 69

TRS0053 CCAAT-binding factors (CBF-A) DNA-binding 0 0 1 1

TRS0054 Corticoid-type Cys4 zinc finger transcription factors DNA-binding 3 0 2 5

TRS0055 Estrogen-type Cys4 zinc finger transcription factors DNA-binding 0 2 9 11

TRS0056 Caudal type of homeotic transcription factors DNA-binding 0 0 4 4

TRS0057 Even-skipped type of homeotic transcription factors DNA-binding 0 2 0 2

TRS0059 Msh type of homeotic transcription factors DNA-binding 0 1 2 3

TRS0060 Myb-type transcription factors (2) DNA-binding 0 0 4 4

TRS0061 Myb-type transcription factors (3) DNA-binding 0 0 4 4

TRS0062 Myb-type transcription factors (1) DNA-binding 2 0 2 4

TRS0063 RUNT transcription factors DNA-binding 0 5 1 6

TRS0066 Zinc Ribbon (TFIIS) transcription factors DNA-binding 100 16 7 123

TRS0067 Poly(ADP-ribose) polymerase zinc finger transcription factors DNA-binding 5 3 1 9

TRS0068 Some RING-type zinc fingers Prot-prot interaction 923 154 4 1081

TRS0071 RF-X transcription factors Prot-prot interaction 3 0 2 5

TRS0072 RF-X transcription factors Unknown 1 0 3 4

TRS0073 RF-X transcription factors Unknown 3 0 3 6

TRS motifs numbers in different Eukaryote Proteomes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro.

All Probs
InterPro All Probs/ProtLoc
InterPro Very Probable
InterPro Very Probable/ProtLoc
InterPro

1016
Incognito 335
399
Incognito 153
5
Incognito 3
1
Incognito 0

5604
Incognito 1728
1548
Incognito 539
232
Incognito 183
150
Incognito 125

708
Incognito 166
546
Incognito 120
303
Incognito 198
235
Incognito 146

Total 7328 2493 540 386

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against GOA.

All Probs
GOA All Probs/ProtLoc
GOA Very Probable
GOA Very Probable/ProtLoc
GOA

6162
Incognito 2217
2192
Incognito 811
443
Incognito 384
311
Incognito 271

983
Incognito 12
147
Incognito 1
22
Incognito 0
9
Incognito 0

183
Incognito 0
154
Incognito 0
75
Incognito 0
66
Incognito 0

Total 7328 2493 540 386

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro & GOA.

All Probs
InterPro & GOA All Probs/ProtLoc
InterPro & GOA Very Probable
InterPro & GOA Very Probable/ProtLoc
InterPro & GOA

984
Incognito 335
391
Incognito 153
4
Incognito 3
0
Incognito 0

5610
Incognito 1728
1538
Incognito 539
229
Incognito
147
Incognito 125

734
Incognito 166
564
Incognito 120
307
Incognito 198
239
Incognito 146

Total 7328 2493 540 386

Symbol Codes

All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc

2292 834 391 277

Symbol Codes

All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc

Entries with predicted Transcription Factor associated motifs but not common Transcription Factor motifs (DNA-binding ones) 593 149 9 6

Centre Proteòmica i Bioinformàtica Aplicada

Javascript NOT activated.
Some browsing enhancements such as PopUps will not work.
You may prefer to activate Javascript if your browser supports it.

	All Probs InterPro	All Probs/ProtLoc InterPro	Very Probable InterPro	Very Probable/ProtLoc InterPro
	1016 Incognito 335	399 Incognito 153	5 Incognito 3	1 Incognito 0
	5604 Incognito 1728	1548 Incognito 539	232 Incognito 183	150 Incognito 125
	708 Incognito 166	546 Incognito 120	303 Incognito 198	235 Incognito 146
Total	7328	2493	540	386

	All Probs GOA	All Probs/ProtLoc GOA	Very Probable GOA	Very Probable/ProtLoc GOA
	6162 Incognito 2217	2192 Incognito 811	443 Incognito 384	311 Incognito 271
	983 Incognito 12	147 Incognito 1	22 Incognito 0	9 Incognito 0
	183 Incognito 0	154 Incognito 0	75 Incognito 0	66 Incognito 0
Total	7328	2493	540	386

	All Probs InterPro & GOA	All Probs/ProtLoc InterPro & GOA	Very Probable InterPro & GOA	Very Probable/ProtLoc InterPro & GOA
	984 Incognito 335	391 Incognito 153	4 Incognito 3	0 Incognito 0
	5610 Incognito 1728	1538 Incognito 539	229 Incognito	147 Incognito 125
	734 Incognito 166	564 Incognito 120	307 Incognito 198	239 Incognito 146
Total	7328	2493	540	386

	POSSIBLE	PROBABLE	VERY PROBABLE
TranScout detected	4169	3203	549

TRS	Signature	Function	Possible	Probable	Very Probable	Total
TRS0001	Cys2His2 zinc finger transcription factors	DNA-binding	4524	4716	666	9906
TRS0002	Progesterone-type Cys4 zinc finger transcription factors	DNA-binding	0	1	0	1
TRS0005	Retinoic acid-type Cys4 zinc finger transcription factors	DNA-binding	0	3	0	3
TRS0006	Thyroid receptor-type Cys4 zinc finger transcription factors	DNA-binding	5	0	0	5
TRS0007	Vitamin D-type Cys4 zinc finger transcription factors	DNA-binding	0	0	3	3
TRS0009	PPAR-type Cys4 zinc finger transcription factors	DNA-binding	0	5	0	5
TRS0012	HNF-type Cys4 zinc finger transcription factors	DNA-binding	3	0	0	3
TRS0014	Abd_b type of homeotic transcription factors	DNA-binding	21	1	7	29
TRS0015	Antennapedia type of homeotic transcription factors	DNA-binding	76	16	22	114
TRS0017	Engrailed type of homeotic transcription factors	DNA-binding	0	0	3	3
TRS0018	LIM type of homeotic transcription factors	DNA-binding	6	2	11	19
TRS0019	NK1 type of homeotic transcription factors	DNA-binding	0	1	0	1
TRS0020	NK2 type of homeotic transcription factors	DNA-binding	1	5	2	8
TRS0021	NK3 type of homeotic transcription factors	DNA-binding	0	0	1	1
TRS0022	Paired type of homeotic transcription factors	DNA-binding	2	14	27	43
TRS0023	POU type of homeotic transcription factors	DNA-binding	1	4	9	14
TRS0024	IclR family of transcription factors	DNA-binding	12	17	2	31
TRS0025	Homeotic transcription factors	DNA-binding	14	99	84	197
TRS0026	bZIP transcription factors	DNA-binding	67	34	0	101
TRS0028	RF-X transcription factors	DNA-binding	0	0	6	6
TRS0029	Heat shock transcription factors	DNA-binding	5	0	4	9
TRS0030	Fork head / winged helix transcription factors	DNA-binding	274	493	31	798
TRS0031	MADS transcription factors	DNA-binding	3	2	0	5
TRS0032	TATA-binding proteins	DNA-binding	0	1	1	2
TRS0034	Cys4 zinc finger transcription factors	DNA-binding	9	53	3	65
TRS0035	Cys4 GATA-type zinc finger transcription factors	DNA-binding	10	147	14	171
TRS0036	Cys6 zinc finger transcription factors	DNA-binding	0	1	0	1
TRS0037	C3HC4 (RING) zinc finger transcription factors	DNA-binding	7	5	0	12
TRS0039	CCHC zinc finger transcription factors	DNA-binding	20	25	0	45
TRS0040	LysR family of transcription factors	DNA-binding	7	8	0	15
TRS0041	LacI family of transcription factors	DNA-binding	1295	207	4	1506
TRS0042	GntR family of transcription factors	DNA-binding	2	1	0	3
TRS0043	ArsR family of transcription factors	DNA-binding	37	21	5	63
TRS0044	MerR family of transcription factors	DNA-binding	17	4	0	21
TRS0045	AraC family of transcription factors	DNA-binding	21	18	0	39
TRS0046	MAR family of transcription factors	DNA-binding	16	0	0	16
TRS0047	TetR family of transcription factors	DNA-binding	258	92	4	354
TRS0048	LuxR family of transcriptional activator	DNA-binding	92	1	0	93
TRS0049	AsnC-like transcription activators	DNA-binding	0	5	0	5
TRS0050	bZIP basic domain of Jun type	DNA-binding	0	2	0	2
TRS0051	Some homeotic transcription factors	Zinc binding	65	229	121	415
TRS0052	Variety of transcription factors	Assembly/activation	6	44	19	69
TRS0053	CCAAT-binding factors (CBF-A)	DNA-binding	0	0	1	1
TRS0054	Corticoid-type Cys4 zinc finger transcription factors	DNA-binding	3	0	2	5
TRS0055	Estrogen-type Cys4 zinc finger transcription factors	DNA-binding	0	2	9	11
TRS0056	Caudal type of homeotic transcription factors	DNA-binding	0	0	4	4
TRS0057	Even-skipped type of homeotic transcription factors	DNA-binding	0	2	0	2
TRS0059	Msh type of homeotic transcription factors	DNA-binding	0	1	2	3
TRS0060	Myb-type transcription factors (2)	DNA-binding	0	0	4	4
TRS0061	Myb-type transcription factors (3)	DNA-binding	0	0	4	4
TRS0062	Myb-type transcription factors (1)	DNA-binding	2	0	2	4
TRS0063	RUNT transcription factors	DNA-binding	0	5	1	6
TRS0066	Zinc Ribbon (TFIIS) transcription factors	DNA-binding	100	16	7	123
TRS0067	Poly(ADP-ribose) polymerase zinc finger transcription factors	DNA-binding	5	3	1	9
TRS0068	Some RING-type zinc fingers	Prot-prot interaction	923	154	4	1081
TRS0071	RF-X transcription factors	Prot-prot interaction	3	0	2	5
TRS0072	RF-X transcription factors	Unknown	1	0	3	4
TRS0073	RF-X transcription factors	Unknown	3	0	3	6

	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
	2292	834	391	277

TrSDB Analyses

Rattus norvegicus Proteome statistics