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TrSDB Analyses

Homo sapiens Proteome statistics

Proteins predicted with TranScout with their associated probability (at least one domain detected as a given probability). Priority to probabilities is the following one: VERY PROBABLE > PROBABLE > POSSIBLE.

POSSIBLE PROBABLE VERY PROBABLE

TranScout detected 6837 5106 1069

Proteins with at least one TRS motif detected by TranScout : 13012
Protein entries in current proteome : 47306

Predicted TranScout motifs by type and probability :

TRS Signature Function Possible Probable Very Probable Total

TRS0001 Cys2His2 zinc finger transcription factors DNA-binding 7876 9523 2446 19845

TRS0002 Progesterone-type Cys4 zinc finger transcription factors DNA-binding 0 4 0 4

TRS0005 Retinoic acid-type Cys4 zinc finger transcription factors DNA-binding 0 6 0 6

TRS0006 Thyroid receptor-type Cys4 zinc finger transcription factors DNA-binding 7 0 0 7

TRS0007 Vitamin D-type Cys4 zinc finger transcription factors DNA-binding 0 0 6 6

TRS0009 PPAR-type Cys4 zinc finger transcription factors DNA-binding 0 4 0 4

TRS0012 HNF-type Cys4 zinc finger transcription factors DNA-binding 4 0 0 4

TRS0014 Abd_b type of homeotic transcription factors DNA-binding 23 3 13 39

TRS0015 Antennapedia type of homeotic transcription factors DNA-binding 97 19 26 142

TRS0017 Engrailed type of homeotic transcription factors DNA-binding 0 0 2 2

TRS0018 LIM type of homeotic transcription factors DNA-binding 7 5 12 24

TRS0020 NK2 type of homeotic transcription factors DNA-binding 1 3 5 9

TRS0021 NK3 type of homeotic transcription factors DNA-binding 0 0 6 6

TRS0022 Paired type of homeotic transcription factors DNA-binding 16 16 31 63

TRS0023 POU type of homeotic transcription factors DNA-binding 3 9 15 27

TRS0024 IclR family of transcription factors DNA-binding 32 23 8 63

TRS0025 Homeotic transcription factors DNA-binding 29 149 103 281

TRS0026 bZIP transcription factors DNA-binding 101 36 0 137

TRS0028 RF-X transcription factors DNA-binding 0 0 5 5

TRS0029 Heat shock transcription factors DNA-binding 14 2 5 21

TRS0030 Fork head / winged helix transcription factors DNA-binding 417 654 55 1126

TRS0031 MADS transcription factors DNA-binding 0 15 0 15

TRS0032 TATA-binding proteins DNA-binding 0 0 2 2

TRS0034 Cys4 zinc finger transcription factors DNA-binding 13 63 5 81

TRS0035 Cys4 GATA-type zinc finger transcription factors DNA-binding 10 270 34 314

TRS0036 Cys6 zinc finger transcription factors DNA-binding 0 3 0 3

TRS0037 C3HC4 (RING) zinc finger transcription factors DNA-binding 14 6 0 20

TRS0039 CCHC zinc finger transcription factors DNA-binding 38 14 0 52

TRS0040 LysR family of transcription factors DNA-binding 14 12 0 26

TRS0041 LacI family of transcription factors DNA-binding 2113 231 6 2350

TRS0042 GntR family of transcription factors DNA-binding 6 2 0 8

TRS0043 ArsR family of transcription factors DNA-binding 75 39 9 123

TRS0044 MerR family of transcription factors DNA-binding 27 0 0 27

TRS0045 AraC family of transcription factors DNA-binding 28 32 0 60

TRS0046 MAR family of transcription factors DNA-binding 24 1 0 25

TRS0047 TetR family of transcription factors DNA-binding 373 141 1 515

TRS0048 LuxR family of transcriptional activator DNA-binding 128 5 0 133

TRS0049 AsnC-like transcription activators DNA-binding 3 6 0 9

TRS0050 bZIP basic domain of Jun type DNA-binding 0 2 0 2

TRS0051 Some homeotic transcription factors Zinc binding 127 454 157 738

TRS0052 Variety of transcription factors Assembly/activation 14 58 22 94

TRS0053 CCAAT-binding factors (CBF-A) DNA-binding 1 0 1 2

TRS0054 Corticoid-type Cys4 zinc finger transcription factors DNA-binding 5 0 3 8

TRS0055 Estrogen-type Cys4 zinc finger transcription factors DNA-binding 0 4 12 16

TRS0056 Caudal type of homeotic transcription factors DNA-binding 1 0 2 3

TRS0057 Even-skipped type of homeotic transcription factors DNA-binding 0 2 0 2

TRS0059 Msh type of homeotic transcription factors DNA-binding 0 0 2 2

TRS0060 Myb-type transcription factors (2) DNA-binding 7 0 9 16

TRS0061 Myb-type transcription factors (3) DNA-binding 0 0 9 9

TRS0062 Myb-type transcription factors (1) DNA-binding 1 0 8 9

TRS0063 RUNT transcription factors DNA-binding 0 6 10 16

TRS0066 Zinc Ribbon (TFIIS) transcription factors DNA-binding 235 17 5 257

TRS0067 Poly(ADP-ribose) polymerase zinc finger transcription factors DNA-binding 16 13 1 30

TRS0068 Some RING-type zinc fingers Prot-prot interaction 1482 269 18 1769

TRS0071 RF-X transcription factors Prot-prot interaction 2 0 1 3

TRS0072 RF-X transcription factors Unknown 0 2 3 5

TRS0073 RF-X transcription factors Unknown 3 0 2 5

TRS motifs numbers in different Eukaryote Proteomes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro.

All Probs
InterPro All Probs/ProtLoc
InterPro Very Probable
InterPro Very Probable/ProtLoc
InterPro

2641
Incognito 655
1149
Incognito 315
28
Incognito 10
19
Incognito 7

8106
Incognito 1109
2563
Incognito 406
390
Incognito 157
264
Incognito 115

1289
Incognito 101
938
Incognito 62
634
Incognito 197
456
Incognito 122

Total 12036 4650 1052 739

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against GOA.

All Probs
GOA All Probs/ProtLoc
GOA Very Probable
GOA Very Probable/ProtLoc
GOA

6152
Incognito 1231
2581
Incognito 569
352
Incognito 120
246
Incognito 79

4627
Incognito 533
1168
Incognito 150
131
Incognito 65
86
Incognito 52

1257
Incognito 101
901
Incognito 64
569
Incognito 179
407
Incognito 113

Total 12036 4650 1052 739

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro & GOA.

All Probs
InterPro & GOA All Probs/ProtLoc
InterPro & GOA Very Probable
InterPro & GOA Very Probable/ProtLoc
InterPro & GOA

2210
Incognito 635
1015
Incognito 309
12
Incognito 8
7
Incognito 6

8221
Incognito 1115
2468
Incognito 401
316
Incognito 149
204
Incognito 108

1605
Incognito 115
1167
Incognito 73
724
Incognito 207
528
Incognito 130

Total 12036 4650 1052 739

Symbol Codes

All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc

1928 801 367 245

Symbol Codes

All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc

Entries with predicted Transcription Factor associated motifs but not common Transcription Factor motifs (DNA-binding ones) 976 248 17 5

Centre Proteòmica i Bioinformàtica Aplicada

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	All Probs InterPro	All Probs/ProtLoc InterPro	Very Probable InterPro	Very Probable/ProtLoc InterPro
	2641 Incognito 655	1149 Incognito 315	28 Incognito 10	19 Incognito 7
	8106 Incognito 1109	2563 Incognito 406	390 Incognito 157	264 Incognito 115
	1289 Incognito 101	938 Incognito 62	634 Incognito 197	456 Incognito 122
Total	12036	4650	1052	739

	All Probs GOA	All Probs/ProtLoc GOA	Very Probable GOA	Very Probable/ProtLoc GOA
	6152 Incognito 1231	2581 Incognito 569	352 Incognito 120	246 Incognito 79
	4627 Incognito 533	1168 Incognito 150	131 Incognito 65	86 Incognito 52
	1257 Incognito 101	901 Incognito 64	569 Incognito 179	407 Incognito 113
Total	12036	4650	1052	739

	All Probs InterPro & GOA	All Probs/ProtLoc InterPro & GOA	Very Probable InterPro & GOA	Very Probable/ProtLoc InterPro & GOA
	2210 Incognito 635	1015 Incognito 309	12 Incognito 8	7 Incognito 6
	8221 Incognito 1115	2468 Incognito 401	316 Incognito 149	204 Incognito 108
	1605 Incognito 115	1167 Incognito 73	724 Incognito 207	528 Incognito 130
Total	12036	4650	1052	739

	POSSIBLE	PROBABLE	VERY PROBABLE
TranScout detected	6837	5106	1069

TRS	Signature	Function	Possible	Probable	Very Probable	Total
TRS0001	Cys2His2 zinc finger transcription factors	DNA-binding	7876	9523	2446	19845
TRS0002	Progesterone-type Cys4 zinc finger transcription factors	DNA-binding	0	4	0	4
TRS0005	Retinoic acid-type Cys4 zinc finger transcription factors	DNA-binding	0	6	0	6
TRS0006	Thyroid receptor-type Cys4 zinc finger transcription factors	DNA-binding	7	0	0	7
TRS0007	Vitamin D-type Cys4 zinc finger transcription factors	DNA-binding	0	0	6	6
TRS0009	PPAR-type Cys4 zinc finger transcription factors	DNA-binding	0	4	0	4
TRS0012	HNF-type Cys4 zinc finger transcription factors	DNA-binding	4	0	0	4
TRS0014	Abd_b type of homeotic transcription factors	DNA-binding	23	3	13	39
TRS0015	Antennapedia type of homeotic transcription factors	DNA-binding	97	19	26	142
TRS0017	Engrailed type of homeotic transcription factors	DNA-binding	0	0	2	2
TRS0018	LIM type of homeotic transcription factors	DNA-binding	7	5	12	24
TRS0020	NK2 type of homeotic transcription factors	DNA-binding	1	3	5	9
TRS0021	NK3 type of homeotic transcription factors	DNA-binding	0	0	6	6
TRS0022	Paired type of homeotic transcription factors	DNA-binding	16	16	31	63
TRS0023	POU type of homeotic transcription factors	DNA-binding	3	9	15	27
TRS0024	IclR family of transcription factors	DNA-binding	32	23	8	63
TRS0025	Homeotic transcription factors	DNA-binding	29	149	103	281
TRS0026	bZIP transcription factors	DNA-binding	101	36	0	137
TRS0028	RF-X transcription factors	DNA-binding	0	0	5	5
TRS0029	Heat shock transcription factors	DNA-binding	14	2	5	21
TRS0030	Fork head / winged helix transcription factors	DNA-binding	417	654	55	1126
TRS0031	MADS transcription factors	DNA-binding	0	15	0	15
TRS0032	TATA-binding proteins	DNA-binding	0	0	2	2
TRS0034	Cys4 zinc finger transcription factors	DNA-binding	13	63	5	81
TRS0035	Cys4 GATA-type zinc finger transcription factors	DNA-binding	10	270	34	314
TRS0036	Cys6 zinc finger transcription factors	DNA-binding	0	3	0	3
TRS0037	C3HC4 (RING) zinc finger transcription factors	DNA-binding	14	6	0	20
TRS0039	CCHC zinc finger transcription factors	DNA-binding	38	14	0	52
TRS0040	LysR family of transcription factors	DNA-binding	14	12	0	26
TRS0041	LacI family of transcription factors	DNA-binding	2113	231	6	2350
TRS0042	GntR family of transcription factors	DNA-binding	6	2	0	8
TRS0043	ArsR family of transcription factors	DNA-binding	75	39	9	123
TRS0044	MerR family of transcription factors	DNA-binding	27	0	0	27
TRS0045	AraC family of transcription factors	DNA-binding	28	32	0	60
TRS0046	MAR family of transcription factors	DNA-binding	24	1	0	25
TRS0047	TetR family of transcription factors	DNA-binding	373	141	1	515
TRS0048	LuxR family of transcriptional activator	DNA-binding	128	5	0	133
TRS0049	AsnC-like transcription activators	DNA-binding	3	6	0	9
TRS0050	bZIP basic domain of Jun type	DNA-binding	0	2	0	2
TRS0051	Some homeotic transcription factors	Zinc binding	127	454	157	738
TRS0052	Variety of transcription factors	Assembly/activation	14	58	22	94
TRS0053	CCAAT-binding factors (CBF-A)	DNA-binding	1	0	1	2
TRS0054	Corticoid-type Cys4 zinc finger transcription factors	DNA-binding	5	0	3	8
TRS0055	Estrogen-type Cys4 zinc finger transcription factors	DNA-binding	0	4	12	16
TRS0056	Caudal type of homeotic transcription factors	DNA-binding	1	0	2	3
TRS0057	Even-skipped type of homeotic transcription factors	DNA-binding	0	2	0	2
TRS0059	Msh type of homeotic transcription factors	DNA-binding	0	0	2	2
TRS0060	Myb-type transcription factors (2)	DNA-binding	7	0	9	16
TRS0061	Myb-type transcription factors (3)	DNA-binding	0	0	9	9
TRS0062	Myb-type transcription factors (1)	DNA-binding	1	0	8	9
TRS0063	RUNT transcription factors	DNA-binding	0	6	10	16
TRS0066	Zinc Ribbon (TFIIS) transcription factors	DNA-binding	235	17	5	257
TRS0067	Poly(ADP-ribose) polymerase zinc finger transcription factors	DNA-binding	16	13	1	30
TRS0068	Some RING-type zinc fingers	Prot-prot interaction	1482	269	18	1769
TRS0071	RF-X transcription factors	Prot-prot interaction	2	0	1	3
TRS0072	RF-X transcription factors	Unknown	0	2	3	5
TRS0073	RF-X transcription factors	Unknown	3	0	2	5

	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
	1928	801	367	245

TrSDB Analyses

Homo sapiens Proteome statistics