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TrSDB Analyses

Drosophila melanogaster Proteome statistics

Proteins predicted with TranScout with their associated probability (at least one domain detected as a given probability). Priority to probabilities is the following one: VERY PROBABLE > PROBABLE > POSSIBLE.

POSSIBLE PROBABLE VERY PROBABLE

TranScout detected 2874 2272 182

Proteins with at least one TRS motif detected by TranScout : 5328
Protein entries in current proteome : 16823

Predicted TranScout motifs by type and probability :

TRS Signature Function Possible Probable Very Probable Total

TRS0001 Cys2His2 zinc finger transcription factors DNA-binding 3147 3035 36 6218

TRS0009 PPAR-type Cys4 zinc finger transcription factors DNA-binding 3 0 0 3

TRS0010 Ecdysone-type Cys4 zinc finger transcription factors DNA-binding 3 0 0 3

TRS0012 HNF-type Cys4 zinc finger transcription factors DNA-binding 3 0 0 3

TRS0014 Abd_b type of homeotic transcription factors DNA-binding 7 1 0 8

TRS0015 Antennapedia type of homeotic transcription factors DNA-binding 50 14 11 75

TRS0017 Engrailed type of homeotic transcription factors DNA-binding 0 1 2 3

TRS0018 LIM type of homeotic transcription factors DNA-binding 5 5 3 13

TRS0019 NK1 type of homeotic transcription factors DNA-binding 0 1 0 1

TRS0020 NK2 type of homeotic transcription factors DNA-binding 0 2 0 2

TRS0022 Paired type of homeotic transcription factors DNA-binding 8 13 14 35

TRS0023 POU type of homeotic transcription factors DNA-binding 1 3 2 6

TRS0024 IclR family of transcription factors DNA-binding 10 10 0 20

TRS0025 Homeotic transcription factors DNA-binding 8 65 46 119

TRS0026 bZIP transcription factors DNA-binding 54 16 0 70

TRS0028 RF-X transcription factors DNA-binding 0 1 0 1

TRS0029 Heat shock transcription factors DNA-binding 4 1 1 6

TRS0030 Fork head / winged helix transcription factors DNA-binding 190 329 13 532

TRS0031 MADS transcription factors DNA-binding 0 1 0 1

TRS0032 TATA-binding proteins DNA-binding 2 0 1 3

TRS0034 Cys4 zinc finger transcription factors DNA-binding 12 12 2 26

TRS0035 Cys4 GATA-type zinc finger transcription factors DNA-binding 4 91 17 112

TRS0036 Cys6 zinc finger transcription factors DNA-binding 1 3 0 4

TRS0037 C3HC4 (RING) zinc finger transcription factors DNA-binding 8 2 0 10

TRS0039 CCHC zinc finger transcription factors DNA-binding 9 0 0 9

TRS0040 LysR family of transcription factors DNA-binding 16 18 0 34

TRS0041 LacI family of transcription factors DNA-binding 969 135 4 1108

TRS0043 ArsR family of transcription factors DNA-binding 37 10 2 49

TRS0044 MerR family of transcription factors DNA-binding 4 0 0 4

TRS0045 AraC family of transcription factors DNA-binding 31 17 0 48

TRS0046 MAR family of transcription factors DNA-binding 8 0 0 8

TRS0047 TetR family of transcription factors DNA-binding 203 84 0 287

TRS0048 LuxR family of transcriptional activator DNA-binding 72 5 0 77

TRS0049 AsnC-like transcription activators DNA-binding 1 0 0 1

TRS0051 Some homeotic transcription factors Zinc binding 58 161 97 316

TRS0052 Variety of transcription factors Assembly/activation 3 24 5 32

TRS0055 Estrogen-type Cys4 zinc finger transcription factors DNA-binding 2 0 0 2

TRS0057 Even-skipped type of homeotic transcription factors DNA-binding 0 1 0 1

TRS0059 Msh type of homeotic transcription factors DNA-binding 0 2 0 2

TRS0060 Myb-type transcription factors (2) DNA-binding 0 1 0 1

TRS0061 Myb-type transcription factors (3) DNA-binding 0 1 0 1

TRS0063 RUNT transcription factors DNA-binding 1 1 0 2

TRS0066 Zinc Ribbon (TFIIS) transcription factors DNA-binding 46 6 1 53

TRS0067 Poly(ADP-ribose) polymerase zinc finger transcription factors DNA-binding 1 3 0 4

TRS0068 Some RING-type zinc fingers Prot-prot interaction 782 107 3 892

TRS motifs numbers in different Eukaryote Proteomes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro.

All Probs
InterPro All Probs/ProtLoc
InterPro Very Probable
InterPro Very Probable/ProtLoc
InterPro

1415
Incognito 11
650
Incognito 1
23
Incognito 1
21
Incognito 0

3123
Incognito 22
1070
Incognito 8
70
Incognito 2
40
Incognito 2

316
Incognito 1
274
Incognito 1
85
Incognito 0
81
Incognito 0

Total 4854 1994 178 142

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against GOA.

All Probs
GOA All Probs/ProtLoc
GOA Very Probable
GOA Very Probable/ProtLoc
GOA

4014
Incognito 24
1653
Incognito 5
117
Incognito 3
86
Incognito 2

670
Incognito 8
188
Incognito 3
6
Incognito 0
3
Incognito 0

170
Incognito 2
153
Incognito 2
55
Incognito 0
53
Incognito 0

Total 4854 1994 178 142

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro & GOA.

All Probs
InterPro & GOA All Probs/ProtLoc
InterPro & GOA Very Probable
InterPro & GOA Very Probable/ProtLoc
InterPro & GOA

1382
Incognito 8
636
Incognito 1
22
Incognito 1
20
Incognito 0

3124
Incognito 24
1061
Incognito 7
66
Incognito 2
37
Incognito 2

348
Incognito 2
297
Incognito 2
90
Incognito 0
85
Incognito 0

Total 4854 1994 178 142

Symbol Codes

All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc

37 11 3 2

Symbol Codes

All Probs All Probs/ProtLoc Very Probable Very Probable/ProtLoc

Entries with predicted Transcription Factor associated motifs but not common Transcription Factor motifs (DNA-binding ones) 474 148 4 3

Centre Proteòmica i Bioinformàtica Aplicada

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	All Probs InterPro	All Probs/ProtLoc InterPro	Very Probable InterPro	Very Probable/ProtLoc InterPro
	1415 Incognito 11	650 Incognito 1	23 Incognito 1	21 Incognito 0
	3123 Incognito 22	1070 Incognito 8	70 Incognito 2	40 Incognito 2
	316 Incognito 1	274 Incognito 1	85 Incognito 0	81 Incognito 0
Total	4854	1994	178	142

	All Probs GOA	All Probs/ProtLoc GOA	Very Probable GOA	Very Probable/ProtLoc GOA
	4014 Incognito 24	1653 Incognito 5	117 Incognito 3	86 Incognito 2
	670 Incognito 8	188 Incognito 3	6 Incognito 0	3 Incognito 0
	170 Incognito 2	153 Incognito 2	55 Incognito 0	53 Incognito 0
Total	4854	1994	178	142

	All Probs InterPro & GOA	All Probs/ProtLoc InterPro & GOA	Very Probable InterPro & GOA	Very Probable/ProtLoc InterPro & GOA
	1382 Incognito 8	636 Incognito 1	22 Incognito 1	20 Incognito 0
	3124 Incognito 24	1061 Incognito 7	66 Incognito 2	37 Incognito 2
	348 Incognito 2	297 Incognito 2	90 Incognito 0	85 Incognito 0
Total	4854	1994	178	142

	POSSIBLE	PROBABLE	VERY PROBABLE
TranScout detected	2874	2272	182

TRS	Signature	Function	Possible	Probable	Very Probable	Total
TRS0001	Cys2His2 zinc finger transcription factors	DNA-binding	3147	3035	36	6218
TRS0009	PPAR-type Cys4 zinc finger transcription factors	DNA-binding	3	0	0	3
TRS0010	Ecdysone-type Cys4 zinc finger transcription factors	DNA-binding	3	0	0	3
TRS0012	HNF-type Cys4 zinc finger transcription factors	DNA-binding	3	0	0	3
TRS0014	Abd_b type of homeotic transcription factors	DNA-binding	7	1	0	8
TRS0015	Antennapedia type of homeotic transcription factors	DNA-binding	50	14	11	75
TRS0017	Engrailed type of homeotic transcription factors	DNA-binding	0	1	2	3
TRS0018	LIM type of homeotic transcription factors	DNA-binding	5	5	3	13
TRS0019	NK1 type of homeotic transcription factors	DNA-binding	0	1	0	1
TRS0020	NK2 type of homeotic transcription factors	DNA-binding	0	2	0	2
TRS0022	Paired type of homeotic transcription factors	DNA-binding	8	13	14	35
TRS0023	POU type of homeotic transcription factors	DNA-binding	1	3	2	6
TRS0024	IclR family of transcription factors	DNA-binding	10	10	0	20
TRS0025	Homeotic transcription factors	DNA-binding	8	65	46	119
TRS0026	bZIP transcription factors	DNA-binding	54	16	0	70
TRS0028	RF-X transcription factors	DNA-binding	0	1	0	1
TRS0029	Heat shock transcription factors	DNA-binding	4	1	1	6
TRS0030	Fork head / winged helix transcription factors	DNA-binding	190	329	13	532
TRS0031	MADS transcription factors	DNA-binding	0	1	0	1
TRS0032	TATA-binding proteins	DNA-binding	2	0	1	3
TRS0034	Cys4 zinc finger transcription factors	DNA-binding	12	12	2	26
TRS0035	Cys4 GATA-type zinc finger transcription factors	DNA-binding	4	91	17	112
TRS0036	Cys6 zinc finger transcription factors	DNA-binding	1	3	0	4
TRS0037	C3HC4 (RING) zinc finger transcription factors	DNA-binding	8	2	0	10
TRS0039	CCHC zinc finger transcription factors	DNA-binding	9	0	0	9
TRS0040	LysR family of transcription factors	DNA-binding	16	18	0	34
TRS0041	LacI family of transcription factors	DNA-binding	969	135	4	1108
TRS0043	ArsR family of transcription factors	DNA-binding	37	10	2	49
TRS0044	MerR family of transcription factors	DNA-binding	4	0	0	4
TRS0045	AraC family of transcription factors	DNA-binding	31	17	0	48
TRS0046	MAR family of transcription factors	DNA-binding	8	0	0	8
TRS0047	TetR family of transcription factors	DNA-binding	203	84	0	287
TRS0048	LuxR family of transcriptional activator	DNA-binding	72	5	0	77
TRS0049	AsnC-like transcription activators	DNA-binding	1	0	0	1
TRS0051	Some homeotic transcription factors	Zinc binding	58	161	97	316
TRS0052	Variety of transcription factors	Assembly/activation	3	24	5	32
TRS0055	Estrogen-type Cys4 zinc finger transcription factors	DNA-binding	2	0	0	2
TRS0057	Even-skipped type of homeotic transcription factors	DNA-binding	0	1	0	1
TRS0059	Msh type of homeotic transcription factors	DNA-binding	0	2	0	2
TRS0060	Myb-type transcription factors (2)	DNA-binding	0	1	0	1
TRS0061	Myb-type transcription factors (3)	DNA-binding	0	1	0	1
TRS0063	RUNT transcription factors	DNA-binding	1	1	0	2
TRS0066	Zinc Ribbon (TFIIS) transcription factors	DNA-binding	46	6	1	53
TRS0067	Poly(ADP-ribose) polymerase zinc finger transcription factors	DNA-binding	1	3	0	4
TRS0068	Some RING-type zinc fingers	Prot-prot interaction	782	107	3	892

	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
	37	11	3	2

TrSDB Analyses

Drosophila melanogaster Proteome statistics