ACCESSION ANNOTATION INTERPRO GOA TRS Organism: H.sapiens M.musculus R.norvegicus D.melanogaster A.thaliana C.elegans G.theta S.cerevisiae S.pombe Restrict to TranScout Annotated Entries Restrict to InterPro Annotated Entries   Need Help? TranScout Classification Home Analyses Download References Contact About this site TrSDB-current

TrSDB Analyses

Arabidopsis thaliana Proteome statistics

Proteins predicted with TranScout with their associated probability (at least one domain detected as a given probability). Priority to probabilities is the following one: VERY PROBABLE > PROBABLE > POSSIBLE.

	POSSIBLE	PROBABLE	VERY PROBABLE
TranScout detected	4631	2905	104

Proteins with at least one TRS motif detected by TranScout : 7640
Protein entries in current proteome : 26029


Predicted TranScout motifs by type and probability :

TRS	Signature	Function	Possible	Probable	Very Probable	Total
TRS0001	Cys2His2 zinc finger transcription factors	DNA-binding	3622	2054	4	5680
TRS0015	Antennapedia type of homeotic transcription factors	DNA-binding	6	0	0	6
TRS0016	Distal-less type of homeotic transcription factors	DNA-binding	11	8	6	25
TRS0023	POU type of homeotic transcription factors	DNA-binding	1	0	0	1
TRS0024	IclR family of transcription factors	DNA-binding	16	12	4	32
TRS0025	Homeotic transcription factors	DNA-binding	21	37	15	73
TRS0026	bZIP transcription factors	DNA-binding	50	22	0	72
TRS0029	Heat shock transcription factors	DNA-binding	1	3	18	22
TRS0030	Fork head / winged helix transcription factors	DNA-binding	248	452	2	702
TRS0031	MADS transcription factors	DNA-binding	17	12	22	51
TRS0032	TATA-binding proteins	DNA-binding	1	1	2	4
TRS0035	Cys4 GATA-type zinc finger transcription factors	DNA-binding	19	84	22	125
TRS0036	Cys6 zinc finger transcription factors	DNA-binding	0	2	0	2
TRS0037	C3HC4 (RING) zinc finger transcription factors	DNA-binding	16	3	0	19
TRS0039	CCHC zinc finger transcription factors	DNA-binding	59	20	0	79
TRS0040	LysR family of transcription factors	DNA-binding	8	10	0	18
TRS0041	LacI family of transcription factors	DNA-binding	1707	267	4	1978
TRS0042	GntR family of transcription factors	DNA-binding	2	3	0	5
TRS0043	ArsR family of transcription factors	DNA-binding	29	11	0	40
TRS0044	MerR family of transcription factors	DNA-binding	15	0	0	15
TRS0045	AraC family of transcription factors	DNA-binding	38	10	0	48
TRS0046	MAR family of transcription factors	DNA-binding	9	1	0	10
TRS0047	TetR family of transcription factors	DNA-binding	371	124	1	496
TRS0048	LuxR family of transcriptional activator	DNA-binding	63	8	0	71
TRS0049	AsnC-like transcription activators	DNA-binding	11	2	0	13
TRS0051	Some homeotic transcription factors	Zinc binding	33	120	2	155
TRS0052	Variety of transcription factors	Assembly/activation	2	15	4	21
TRS0058	Hdzip type of homeotic transcription factors	DNA-binding	5	11	7	23
TRS0060	Myb-type transcription factors (2)	DNA-binding	19	96	1	116
TRS0061	Myb-type transcription factors (3)	DNA-binding	49	10	0	59
TRS0066	Zinc Ribbon (TFIIS) transcription factors	DNA-binding	30	4	0	34
TRS0067	Poly(ADP-ribose) polymerase zinc finger transcription factors	DNA-binding	8	8	0	16
TRS0068	Some RING-type zinc fingers	Prot-prot interaction	1026	145	1	1172

TRS motifs numbers in different Eukaryote Proteomes


Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro.

	All Probs InterPro	All Probs/ProtLoc InterPro	Very Probable InterPro	Very Probable/ProtLoc InterPro
	1111 Incognito 174	403 Incognito 66	3 Incognito 3	2 Incognito 2
	5239 Incognito 929	1345 Incognito 275	15 Incognito 3	7 Incognito 1
	493 Incognito 78	260 Incognito 30	82 Incognito 17	60 Incognito 13
Total	6843	2008	100	69

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against GOA.

	All Probs GOA	All Probs/ProtLoc GOA	Very Probable GOA	Very Probable/ProtLoc GOA
	4993 Incognito 877	1497 Incognito 288	46 Incognito 17	33 Incognito 12
	1600 Incognito 279	366 Incognito 70	2 Incognito 0	0 Incognito 0
	250 Incognito 25	145 Incognito 13	52 Incognito 6	36 Incognito 4
Total	6843	2008	100	69

Symbol Codes

Entries with TranScout predicted Transcription Factor signatures (just DNA binding ones) against InterPro & GOA.

	All Probs InterPro & GOA	All Probs/ProtLoc InterPro & GOA	Very Probable InterPro & GOA	Very Probable/ProtLoc InterPro & GOA
	1069 Incognito 168	388 Incognito 63	3 Incognito 3	2 Incognito 2
	5270 Incognito 934	1351 Incognito 277	15 Incognito 3	7 Incognito 1
	504 Incognito 79	269 Incognito 31	82 Incognito 17	60 Incognito 13
Total	6843	2008	100	69

Symbol Codes

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	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
	1234	383	23	16

Symbol Codes

	All Probs	All Probs/ProtLoc	Very Probable	Very Probable/ProtLoc
Entries with predicted Transcription Factor associated motifs but not common Transcription Factor motifs (DNA-binding ones)	797	187	4	2